Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11860

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
3,140,926	-				+0.2
3,140,926	-				-0.2
3,140,928	-				-0.0
3,140,930	-				+1.4
3,141,133	-		ABI39_RS11855	0.14	+2.0
3,141,237	+		ABI39_RS11855	0.39	+1.4
3,141,442	+		ABI39_RS11855	0.87	-0.2
3,141,508	+				-1.2
3,141,523	+				+0.8
3,141,532	+				+0.4
3,141,578	-				-0.2
3,141,592	+				+1.4
3,141,787	+		ABI39_RS11860	0.41	-0.4
3,141,858	-		ABI39_RS11860	0.54	-1.4
3,141,986	-		ABI39_RS11860	0.77	+0.2
3,142,031	-		ABI39_RS11860	0.85	-0.9
3,142,109	+				+2.0
3,142,126	+				-0.6
3,142,129	+				+0.4
3,142,130	-				+0.6
3,142,132	-				-0.4
3,142,151	-				-0.2
3,142,154	+				-0.6
3,142,154	+				+0.7
3,142,155	-				-1.9
3,142,157	+				+0.4
3,142,201	+				+1.6
3,142,231	+				+1.1
3,142,276	+		ABI39_RS11865	0.13	-0.7
3,142,276	+		ABI39_RS11865	0.13	-0.1
3,142,277	-		ABI39_RS11865	0.13	-2.3
3,142,277	-		ABI39_RS11865	0.13	+0.0
3,142,376	-		ABI39_RS11865	0.35	-0.3
3,142,383	-		ABI39_RS11865	0.36	+0.2
3,142,403	+		ABI39_RS11865	0.41	+0.1
3,142,536	+		ABI39_RS11865	0.70	+0.7
3,142,564	-		ABI39_RS11865	0.76	+0.9
3,142,685	+				+2.4
3,142,700	-				+0.1
3,142,723	+		ABI39_RS11870	0.15	-0.7
3,142,794	-		ABI39_RS11870	0.39	+0.4
3,142,797	-		ABI39_RS11870	0.40	-0.6
3,142,813	-		ABI39_RS11870	0.45	+0.0
3,142,823	-		ABI39_RS11870	0.49	+0.6
3,142,829	-		ABI39_RS11870	0.51	-0.5
3,142,829	-		ABI39_RS11870	0.51	-1.5
3,142,859	-		ABI39_RS11870	0.61	+0.0
3,142,859	-		ABI39_RS11870	0.61	+0.7
3,142,877	-		ABI39_RS11870	0.67	+0.2
3,142,931	-		ABI39_RS11870	0.85	+1.8
3,142,931	-		ABI39_RS11870	0.85	+0.2
3,142,955	-				-0.4
3,143,018	-				+0.0