Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10195

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
2,720,470	+				+0.3
2,720,515	-				-0.3
2,720,525	-				-0.2
2,720,538	+				+0.5
2,720,554	+				+0.3
2,720,576	+				+0.0
2,720,730	-				-2.0
2,720,751	-				-3.5
2,720,755	+				-0.6
2,720,790	+				-1.8
2,720,813	-				-2.2
2,720,863	+				-0.1
2,720,900	+				+1.5
2,721,212	-		ABI39_RS10195	0.22	-4.0
2,721,284	+		ABI39_RS10195	0.27	-2.1
2,721,284	+		ABI39_RS10195	0.27	-0.8
2,721,285	-		ABI39_RS10195	0.27	-2.1
2,721,285	-		ABI39_RS10195	0.27	-2.6
2,721,322	-		ABI39_RS10195	0.29	-2.2
2,721,387	+		ABI39_RS10195	0.33	-1.2
2,721,480	+		ABI39_RS10195	0.40	-1.5
2,721,523	-		ABI39_RS10195	0.42	-3.1
2,721,579	+		ABI39_RS10195	0.46	-3.0
2,721,664	-		ABI39_RS10195	0.52	-0.1
2,721,664	-		ABI39_RS10195	0.52	-3.1
2,721,951	-		ABI39_RS10195	0.71	-2.5
2,722,051	-		ABI39_RS10195	0.78	-3.8
2,722,051	-		ABI39_RS10195	0.78	-4.5
2,722,060	+		ABI39_RS10195	0.78	-1.1
2,722,268	+				-2.5
2,722,326	+				-0.5
2,722,352	-				-2.7
2,722,362	+				-1.6
2,722,381	+				-0.8
2,722,387	+				-0.8
2,722,475	-				-2.4
2,722,475	-				-2.0
2,722,503	-				-2.8
2,722,564	+		ABI39_RS10200	0.12	-3.5
2,722,565	-		ABI39_RS10200	0.12	-1.1
2,722,565	-		ABI39_RS10200	0.12	-1.8
2,722,723	+		ABI39_RS10200	0.24	-3.7
2,722,724	-		ABI39_RS10200	0.24	-2.7
2,722,790	+		ABI39_RS10200	0.29	-2.6
2,722,840	+		ABI39_RS10200	0.32	-2.2
2,722,840	+		ABI39_RS10200	0.32	-3.2
2,722,896	-		ABI39_RS10200	0.36	-3.1
2,722,901	+		ABI39_RS10200	0.37	-2.4
2,722,950	+		ABI39_RS10200	0.40	-2.0
2,722,961	+		ABI39_RS10200	0.41	-1.1
2,723,022	-		ABI39_RS10200	0.45	-3.5
2,723,121	-		ABI39_RS10200	0.52	-0.1
2,723,122	+		ABI39_RS10200	0.53	-1.8
2,723,123	-		ABI39_RS10200	0.53	-0.4
2,723,123	-		ABI39_RS10200	0.53	-2.6
2,723,210	-		ABI39_RS10200	0.59	-0.5
2,723,259	-		ABI39_RS10200	0.62	-2.1
2,723,350	-		ABI39_RS10200	0.69	-2.9
2,723,373	+		ABI39_RS10200	0.71	-0.5