Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09040

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
2,418,657	+		ABI39_RS09035	0.72	+0.7
2,418,721	+		ABI39_RS09035	0.74	-1.1
2,418,722	-		ABI39_RS09035	0.74	-0.7
2,418,748	+		ABI39_RS09035	0.75	+0.2
2,418,989	+		ABI39_RS09035	0.82	-0.1
2,418,989	+		ABI39_RS09035	0.82	-0.9
2,418,989	+		ABI39_RS09035	0.82	-0.3
2,418,990	-		ABI39_RS09035	0.82	+1.4
2,419,011	-		ABI39_RS09035	0.83	+0.8
2,419,050	+		ABI39_RS09035	0.84	+0.4
2,419,079	-		ABI39_RS09035	0.85	-0.4
2,419,100	-		ABI39_RS09035	0.86	-0.7
2,419,119	-		ABI39_RS09035	0.86	-0.3
2,419,215	+		ABI39_RS09035	0.89	+0.2
2,419,290	-				+0.9
2,419,569	+				+0.2
2,419,597	+				-0.6
2,419,598	-				-1.1
2,419,598	-				-0.1
2,419,711	+				-1.6
2,419,721	+				-1.1
2,419,775	+		ABI39_RS09040	0.10	-1.6
2,419,776	-		ABI39_RS09040	0.10	-2.2
2,419,819	+		ABI39_RS09040	0.13	-0.6
2,419,968	-		ABI39_RS09040	0.23	-1.4
2,420,020	-		ABI39_RS09040	0.27	-1.8
2,420,076	+		ABI39_RS09040	0.30	-1.8
2,420,077	-		ABI39_RS09040	0.30	-1.1
2,420,077	-		ABI39_RS09040	0.30	-1.3
2,420,088	+		ABI39_RS09040	0.31	-0.1
2,420,089	-		ABI39_RS09040	0.31	-1.4
2,420,097	-		ABI39_RS09040	0.32	-2.2
2,420,116	-		ABI39_RS09040	0.33	-1.5
2,420,120	+		ABI39_RS09040	0.33	-1.7
2,420,120	+		ABI39_RS09040	0.33	-1.3
2,420,120	+		ABI39_RS09040	0.33	-2.4
2,420,120	+		ABI39_RS09040	0.33	-3.3
2,420,120	+		ABI39_RS09040	0.33	-2.6
2,420,171	+		ABI39_RS09040	0.37	-0.1
2,420,185	-		ABI39_RS09040	0.38	+0.4
2,420,248	+		ABI39_RS09040	0.42	-3.6
2,420,249	-		ABI39_RS09040	0.42	-1.6
2,420,335	-		ABI39_RS09040	0.48	-1.6
2,420,335	-		ABI39_RS09040	0.48	-1.0
2,420,368	-		ABI39_RS09040	0.50	-2.0
2,420,452	+		ABI39_RS09040	0.56	-1.8
2,420,549	-		ABI39_RS09040	0.62	-2.0
2,420,696	+		ABI39_RS09040	0.72	-2.5
2,420,857	-		ABI39_RS09040	0.83	-1.6
2,420,906	+		ABI39_RS09040	0.87	+0.0
2,420,906	+		ABI39_RS09040	0.87	-1.4
2,420,908	+		ABI39_RS09040	0.87	-2.9
2,420,908	+		ABI39_RS09040	0.87	-2.6
2,420,909	-		ABI39_RS09040	0.87	-2.1
2,420,911	+		ABI39_RS09040	0.87	-2.5
2,420,912	-		ABI39_RS09040	0.87	-2.1
2,421,025	-				-1.5
2,421,114	+				-1.5
2,421,129	+				-0.9
2,421,391	+				-0.1
2,421,398	-				-0.9
2,421,461	-		ABI39_RS09045	0.15	-0.3
2,421,464	+		ABI39_RS09045	0.15	+1.4
2,421,568	+		ABI39_RS09045	0.26	-2.7
2,421,569	-		ABI39_RS09045	0.26	-0.6
2,421,678	-		ABI39_RS09045	0.37	-0.4
2,421,802	-		ABI39_RS09045	0.50	-0.2
2,421,810	+		ABI39_RS09045	0.51	-0.3
2,421,893	+		ABI39_RS09045	0.60	-2.1
2,421,919	+		ABI39_RS09045	0.63	+0.1
2,421,962	+		ABI39_RS09045	0.67	-1.1
2,422,061	-		ABI39_RS09045	0.77	-0.3
2,422,075	+		ABI39_RS09045	0.79	-0.6
2,422,086	+		ABI39_RS09045	0.80	-0.1
2,422,096	-		ABI39_RS09045	0.81	-0.6
2,422,100	-		ABI39_RS09045	0.82	-0.9