Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS08240

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
2,201,217	+		ABI39_RS08235	0.18	+0.6
2,201,217	+		ABI39_RS08235	0.18	-0.2
2,201,218	-		ABI39_RS08235	0.18	+0.2
2,201,317	+		ABI39_RS08235	0.29	-1.2
2,201,327	-		ABI39_RS08235	0.30	-0.3
2,201,328	+		ABI39_RS08235	0.31	+1.3
2,201,354	-		ABI39_RS08235	0.33	+0.0
2,201,528	+		ABI39_RS08235	0.53	+0.8
2,201,693	-		ABI39_RS08235	0.71	-0.6
2,201,715	-		ABI39_RS08235	0.74	+0.9
2,201,774	-		ABI39_RS08235	0.80	-0.2
2,201,880	+				-0.5
2,201,881	-				-1.2
2,201,900	-				-0.5
2,201,997	-				-0.3
2,202,002	-				-0.3
2,202,154	-				+0.1
2,202,176	-				-1.8
2,202,182	+				-2.7
2,202,402	+				+0.4
2,202,403	-				-2.3
2,202,580	+		ABI39_RS08240	0.15	-2.5
2,202,708	-		ABI39_RS08240	0.20	-0.7
2,202,780	+		ABI39_RS08240	0.23	-1.6
2,202,780	+		ABI39_RS08240	0.23	-2.0
2,202,781	-		ABI39_RS08240	0.23	-2.6
2,202,789	-		ABI39_RS08240	0.23	-1.6
2,202,908	-		ABI39_RS08240	0.27	-2.5
2,202,945	+		ABI39_RS08240	0.29	-0.8
2,202,945	+		ABI39_RS08240	0.29	-1.4
2,202,952	-		ABI39_RS08240	0.29	-0.5
2,202,977	+		ABI39_RS08240	0.30	-1.5
2,202,997	-		ABI39_RS08240	0.30	-3.0
2,203,029	+		ABI39_RS08240	0.32	-1.8
2,203,030	-		ABI39_RS08240	0.32	-1.6
2,203,129	-		ABI39_RS08240	0.35	-1.1
2,203,145	-		ABI39_RS08240	0.36	-0.9
2,203,498	-		ABI39_RS08240	0.49	-2.8
2,203,498	-		ABI39_RS08240	0.49	-0.2
2,203,730	+		ABI39_RS08240	0.57	-2.2
2,203,816	+		ABI39_RS08240	0.61	-2.0
2,204,011	-		ABI39_RS08240	0.68	-1.5
2,204,034	-		ABI39_RS08240	0.69	-2.9
2,204,162	+		ABI39_RS08240	0.73	-1.5
2,204,188	+		ABI39_RS08240	0.74	-2.4
2,204,202	-		ABI39_RS08240	0.75	-1.3
2,204,270	-		ABI39_RS08240	0.77	-0.2
2,204,440	+		ABI39_RS08240	0.83	-1.6
2,204,440	+		ABI39_RS08240	0.83	-2.1
2,204,539	-		ABI39_RS08240	0.87	-1.5
2,204,707	+				-1.3
2,204,830	-				-1.7
2,204,897	+				-0.1
2,204,897	+				-0.8
2,204,898	-				-0.1
2,204,922	+				+0.3
2,204,994	-		ABI39_RS08245	0.11	+0.4
2,205,046	-		ABI39_RS08245	0.23	-0.5
2,205,183	+		ABI39_RS08245	0.55	+0.3
2,205,242	-		ABI39_RS08245	0.69	+0.1
2,205,325	-		ABI39_RS08245	0.88	-0.1
2,205,367	-				-0.8
2,205,374	+				+0.8
2,205,397	+				-1.3
2,205,480	-				-0.6
2,205,560	+		ABI39_RS08250	0.13	-0.7
2,205,702	-		ABI39_RS08250	0.24	-0.2