Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06670

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
1,852,977	+		ABI39_RS06660	0.63	+0.2
1,852,999	-		ABI39_RS06660	0.65	+0.1
1,853,033	+		ABI39_RS06660	0.68	+0.4
1,853,040	+		ABI39_RS06660	0.68	+0.6
1,853,267	+		ABI39_RS06660	0.87	-0.7
1,853,269	+		ABI39_RS06660	0.88	+0.1
1,853,270	-		ABI39_RS06660	0.88	+0.7
1,853,270	-		ABI39_RS06660	0.88	-0.6
1,853,270	-		ABI39_RS06660	0.88	+1.1
1,853,270	-		ABI39_RS06660	0.88	+0.2
1,853,414	-				-0.5
1,853,459	+				-0.4
1,853,467	-				+0.5
1,853,548	+		ABI39_RS06665	0.88	-1.1
1,853,549	-				-1.8
1,853,814	+				-0.9
1,853,830	+				+0.2
1,853,966	+				-1.6
1,854,039	-				+2.5
1,854,099	-				-2.1
1,854,099	-				+1.5
1,854,124	+				-3.0
1,854,124	+				-0.5
1,854,218	-		ABI39_RS06670	0.14	-3.0
1,854,281	+		ABI39_RS06670	0.17	+0.5
1,854,380	-		ABI39_RS06670	0.22	-1.5
1,854,464	+		ABI39_RS06670	0.27	-4.8
1,854,575	+		ABI39_RS06670	0.33	-4.3
1,854,636	+		ABI39_RS06670	0.36	-2.6
1,854,636	+		ABI39_RS06670	0.36	-2.1
1,854,637	-		ABI39_RS06670	0.36	-0.3
1,854,637	-		ABI39_RS06670	0.36	-0.1
1,854,787	+		ABI39_RS06670	0.44	-1.7
1,854,807	-		ABI39_RS06670	0.45	-0.5
1,854,984	-		ABI39_RS06670	0.55	-0.8
1,854,988	+		ABI39_RS06670	0.55	-1.1
1,855,284	+		ABI39_RS06670	0.71	+0.5
1,855,284	+		ABI39_RS06670	0.71	-1.9
1,855,294	-		ABI39_RS06670	0.72	-2.0
1,855,301	+		ABI39_RS06670	0.72	-2.0
1,855,350	+		ABI39_RS06670	0.75	-2.5
1,855,350	+		ABI39_RS06670	0.75	-4.1
1,855,351	-		ABI39_RS06670	0.75	-1.3
1,855,351	-		ABI39_RS06670	0.75	-3.3
1,855,359	-		ABI39_RS06670	0.75	-3.5
1,855,478	+		ABI39_RS06670	0.82	-1.1
1,855,536	+		ABI39_RS06670	0.85	-0.3
1,855,546	+		ABI39_RS06670	0.85	-0.3
1,855,548	+		ABI39_RS06670	0.86	-1.1
1,855,654	-				-0.8
1,855,655	+				-3.3
1,855,656	-				-0.1
1,855,742	+				-2.1
1,855,780	+				+0.5
1,855,812	+				-0.4
1,855,837	+				-1.4
1,855,849	+				-1.3
1,856,009	+		ABI39_RS06675	0.17	-1.0
1,856,009	+		ABI39_RS06675	0.17	-2.0
1,856,018	-		ABI39_RS06675	0.18	-2.2
1,856,018	-		ABI39_RS06675	0.18	-3.4
1,856,093	-		ABI39_RS06675	0.25	-1.7
1,856,208	-		ABI39_RS06675	0.37	-3.2
1,856,310	+		ABI39_RS06675	0.47	-2.5
1,856,447	-		ABI39_RS06675	0.61	-3.0
1,856,587	-		ABI39_RS06675	0.75	-3.0
1,856,644	+		ABI39_RS06675	0.80	+1.5
1,856,809	-				-2.4