Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04685

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
1,312,075	+		ABI39_RS04675	0.11	-0.7
1,312,243	+		ABI39_RS04675	0.46	+1.4
1,312,485	+				+0.4
1,312,486	-				-0.6
1,312,489	+				-2.1
1,312,490	-				+0.5
1,312,516	+				-1.1
1,312,527	+				-0.3
1,312,587	-		ABI39_RS04680	0.19	-1.0
1,312,604	-		ABI39_RS04680	0.23	+0.8
1,312,641	-		ABI39_RS04680	0.30	-0.4
1,312,727	+		ABI39_RS04680	0.47	-1.7
1,312,826	-		ABI39_RS04680	0.66	+0.2
1,312,872	+		ABI39_RS04680	0.75	+0.5
1,313,290	-		ABI39_RS04685	0.30	-2.8
1,313,450	+		ABI39_RS04685	0.50	-3.1
1,313,607	-		ABI39_RS04685	0.71	-3.7
1,313,741	+		ABI39_RS04685	0.88	-4.1
1,313,742	-		ABI39_RS04685	0.88	-2.7
1,313,852	+				-4.1
1,313,853	-				-3.2
1,313,876	-				-0.6
1,313,879	+				-2.9
1,313,880	-				-2.5
1,313,955	-				-1.5
1,313,955	-				-2.8
1,313,978	-				-1.8
1,314,074	+		ABI39_RS04690	0.12	-3.3
1,314,139	-		ABI39_RS04690	0.16	-2.7
1,314,140	+		ABI39_RS04690	0.16	-2.0
1,314,142	+		ABI39_RS04690	0.16	-2.4
1,314,142	+		ABI39_RS04690	0.16	-1.6
1,314,143	-		ABI39_RS04690	0.16	-1.5
1,314,145	+		ABI39_RS04690	0.16	-3.1
1,314,189	+		ABI39_RS04690	0.19	-3.0
1,314,189	+		ABI39_RS04690	0.19	-2.1
1,314,306	+		ABI39_RS04690	0.25	-2.3
1,314,307	-		ABI39_RS04690	0.25	-0.9
1,314,307	-		ABI39_RS04690	0.25	-1.2
1,314,818	-		ABI39_RS04690	0.52	-1.4