Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04280

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
1,203,086	+		ABI39_RS04275	0.27	+1.0
1,203,114	+		ABI39_RS04275	0.29	+0.4
1,203,136	-		ABI39_RS04275	0.30	+0.1
1,203,334	-		ABI39_RS04275	0.45	-0.2
1,203,538	-		ABI39_RS04275	0.60	+0.3
1,203,583	-		ABI39_RS04275	0.64	-0.9
1,203,589	+		ABI39_RS04275	0.64	+0.4
1,203,590	-		ABI39_RS04275	0.64	-1.7
1,203,635	+		ABI39_RS04275	0.68	+0.9
1,203,643	-		ABI39_RS04275	0.68	-0.4
1,203,721	-		ABI39_RS04275	0.74	+0.0
1,203,721	-		ABI39_RS04275	0.74	+0.2
1,203,721	-		ABI39_RS04275	0.74	-0.2
1,203,722	+		ABI39_RS04275	0.74	-0.2
1,203,723	-		ABI39_RS04275	0.74	+0.1
1,203,723	-		ABI39_RS04275	0.74	+0.4
1,203,723	-		ABI39_RS04275	0.74	-0.9
1,203,840	+		ABI39_RS04275	0.83	-0.4
1,203,848	+		ABI39_RS04275	0.84	+0.9
1,204,048	+				+0.4
1,204,049	-				+0.1
1,204,049	-				+0.3
1,204,056	+				-0.0
1,204,070	+				+0.6
1,204,260	-		ABI39_RS04280	0.23	+0.4
1,204,276	-		ABI39_RS04280	0.25	-1.2
1,204,276	-		ABI39_RS04280	0.25	-2.7
1,204,335	-		ABI39_RS04280	0.32	+1.4
1,204,381	-		ABI39_RS04280	0.38	-1.2
1,204,545	+		ABI39_RS04280	0.58	+1.4
1,204,546	-		ABI39_RS04280	0.58	-0.6
1,204,546	-		ABI39_RS04280	0.58	-1.2
1,204,647	+		ABI39_RS04280	0.70	-1.6
1,204,680	+		ABI39_RS04280	0.74	-0.9
1,204,803	-		ABI39_RS04280	0.88	-0.2
1,204,848	-				-0.4
1,204,851	+				+0.4
1,205,053	-				+0.1
1,205,057	-				-1.6
1,205,073	-				-1.2
1,205,139	+		ABI39_RS04285	0.13	-0.2
1,205,170	-		ABI39_RS04285	0.15	+2.4
1,205,182	-		ABI39_RS04285	0.16	-0.9
1,205,182	-		ABI39_RS04285	0.16	-1.4
1,205,334	+		ABI39_RS04285	0.24	+1.4
1,205,334	+		ABI39_RS04285	0.24	-0.9
1,205,335	-		ABI39_RS04285	0.24	-2.9
1,205,365	-		ABI39_RS04285	0.26	-1.5
1,205,385	+		ABI39_RS04285	0.27	-0.6
1,205,497	+		ABI39_RS04285	0.33	-1.7
1,205,497	+		ABI39_RS04285	0.33	-1.2
1,205,499	+		ABI39_RS04285	0.33	-0.6
1,205,527	+		ABI39_RS04285	0.35	+0.4
1,205,559	-		ABI39_RS04285	0.37	-1.4
1,205,692	-		ABI39_RS04285	0.44	-1.0
1,205,708	-		ABI39_RS04285	0.45	-2.0
1,205,743	+		ABI39_RS04285	0.47	-0.6
1,205,743	+		ABI39_RS04285	0.47	-0.2
1,205,763	+		ABI39_RS04285	0.48	-0.6
1,205,860	+		ABI39_RS04285	0.53	-0.9