Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02125 and ABI39_RS02130 are separated by 64 nucleotides ABI39_RS02130 and ABI39_RS02135 are separated by 1 nucleotides ABI39_RS02135 and ABI39_RS02140 are separated by 31 nucleotides ABI39_RS02140 and ABI39_RS02145 are separated by 231 nucleotides
ABI39_RS02125: ABI39_RS02125 - hypothetical protein, at 624,377 to 624,682
_RS02125
ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418
_RS02130
ABI39_RS02135: ABI39_RS02135 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 625,420 to 626,166
_RS02135
ABI39_RS02140: ABI39_RS02140 - TetR/AcrR family transcriptional regulator, at 626,198 to 626,797
_RS02140
ABI39_RS02145: ABI39_RS02145 - tRNA-Met, at 627,029 to 627,101
_RS02145
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1 at 624.473 kb on - strand, within ABI39_RS02125 at 624.838 kb on - strand, within ABI39_RS02130 at 625.023 kb on + strand, within ABI39_RS02130 at 625.044 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130 at 625.150 kb on + strand, within ABI39_RS02130 at 625.377 kb on - strand at 625.391 kb on + strand at 625.421 kb on + strand at 626.254 kb on - strand at 626.303 kb on - strand, within ABI39_RS02140 at 626.305 kb on - strand, within ABI39_RS02140 at 626.468 kb on - strand, within ABI39_RS02140 at 626.817 kb on - strand at 626.820 kb on + strand at 626.822 kb on + strand at 626.822 kb on + strand at 626.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) remove 624,473 - ABI39_RS02125 0.31 -2.4 624,838 - ABI39_RS02130 0.14 +0.1 625,023 + ABI39_RS02130 0.41 +0.3 625,044 + ABI39_RS02130 0.44 -0.5 625,063 + ABI39_RS02130 0.47 +0.1 625,063 + ABI39_RS02130 0.47 -0.6 625,070 + ABI39_RS02130 0.48 -0.9 625,070 + ABI39_RS02130 0.48 -0.6 625,150 + ABI39_RS02130 0.60 -0.8 625,377 - +0.2 625,391 + -1.2 625,421 + -0.6 626,254 - -0.8 626,303 - ABI39_RS02140 0.17 -1.2 626,305 - ABI39_RS02140 0.18 -1.2 626,468 - ABI39_RS02140 0.45 +0.8 626,817 - +0.4 626,820 + +1.4 626,822 + -0.2 626,822 + -0.6 626,878 + +0.1
Or see this region's nucleotide sequence