Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01715 and ABI39_RS01720 are separated by 221 nucleotides ABI39_RS01720 and ABI39_RS01725 are separated by 366 nucleotides ABI39_RS01725 and ABI39_RS01730 are separated by 5 nucleotides
ABI39_RS01715: ABI39_RS01715 - hypothetical protein, at 516,991 to 517,263
_RS01715
ABI39_RS01720: ABI39_RS01720 - hypothetical protein, at 517,485 to 517,745
_RS01720
ABI39_RS01725: ABI39_RS01725 - electron transfer flavoprotein subunit beta/FixA family protein, at 518,112 to 519,005
_RS01725
ABI39_RS01730: ABI39_RS01730 - electron transfer flavoprotein subunit alpha/FixB family protein, at 519,011 to 520,030
_RS01730
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 517.117 kb on - strand, within ABI39_RS01715 at 517.194 kb on + strand, within ABI39_RS01715 at 517.301 kb on + strand at 517.320 kb on + strand at 517.385 kb on - strand at 517.412 kb on + strand at 517.470 kb on + strand at 517.470 kb on + strand at 517.474 kb on + strand at 517.475 kb on - strand at 517.475 kb on - strand at 517.526 kb on + strand, within ABI39_RS01720 at 517.597 kb on + strand, within ABI39_RS01720 at 517.601 kb on + strand, within ABI39_RS01720 at 517.602 kb on + strand, within ABI39_RS01720 at 517.617 kb on + strand, within ABI39_RS01720 at 517.617 kb on + strand, within ABI39_RS01720 at 517.681 kb on + strand, within ABI39_RS01720 at 517.730 kb on + strand at 517.730 kb on + strand at 517.730 kb on + strand at 517.748 kb on + strand at 517.859 kb on + strand at 517.859 kb on + strand at 517.895 kb on + strand at 517.896 kb on - strand at 517.967 kb on + strand at 517.973 kb on - strand at 518.086 kb on + strand at 518.109 kb on + strand at 518.109 kb on + strand at 518.109 kb on + strand at 518.110 kb on - strand at 518.111 kb on + strand at 518.349 kb on + strand, within ABI39_RS01725 at 518.349 kb on + strand, within ABI39_RS01725 at 518.759 kb on + strand, within ABI39_RS01725 at 518.791 kb on + strand, within ABI39_RS01725 at 518.791 kb on + strand, within ABI39_RS01725 at 518.793 kb on + strand, within ABI39_RS01725 at 518.984 kb on - strand at 518.993 kb on + strand at 518.993 kb on + strand at 518.993 kb on + strand at 518.994 kb on - strand at 518.994 kb on - strand at 519.021 kb on + strand at 519.021 kb on + strand at 519.027 kb on + strand at 519.028 kb on - strand at 519.028 kb on - strand at 519.100 kb on + strand at 519.168 kb on + strand, within ABI39_RS01730 at 519.226 kb on + strand, within ABI39_RS01730 at 519.434 kb on + strand, within ABI39_RS01730 at 519.608 kb on + strand, within ABI39_RS01730 at 519.609 kb on - strand, within ABI39_RS01730 at 519.612 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.670 kb on + strand, within ABI39_RS01730 at 519.703 kb on + strand, within ABI39_RS01730 at 519.860 kb on - strand, within ABI39_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) remove 517,117 - ABI39_RS01715 0.46 +0.7 517,194 + ABI39_RS01715 0.74 -0.7 517,301 + +0.4 517,320 + +0.6 517,385 - +0.2 517,412 + +0.6 517,470 + -0.2 517,470 + -1.7 517,474 + -1.7 517,475 - +0.0 517,475 - +0.1 517,526 + ABI39_RS01720 0.16 -0.6 517,597 + ABI39_RS01720 0.43 -0.2 517,601 + ABI39_RS01720 0.44 +0.4 517,602 + ABI39_RS01720 0.45 -1.2 517,617 + ABI39_RS01720 0.51 -1.0 517,617 + ABI39_RS01720 0.51 +0.1 517,681 + ABI39_RS01720 0.75 -0.2 517,730 + -0.8 517,730 + +0.7 517,730 + -1.7 517,748 + -0.7 517,859 + +1.4 517,859 + +0.7 517,895 + -0.7 517,896 - +0.2 517,967 + +0.6 517,973 - +0.2 518,086 + +0.2 518,109 + -1.3 518,109 + -2.2 518,109 + -2.2 518,110 - -0.6 518,111 + -2.6 518,349 + ABI39_RS01725 0.27 -2.0 518,349 + ABI39_RS01725 0.27 +1.4 518,759 + ABI39_RS01725 0.72 -0.3 518,791 + ABI39_RS01725 0.76 -1.4 518,791 + ABI39_RS01725 0.76 -2.9 518,793 + ABI39_RS01725 0.76 -0.9 518,984 - -0.9 518,993 + +0.6 518,993 + -0.7 518,993 + -0.3 518,994 - -1.8 518,994 - -0.4 519,021 + -1.6 519,021 + -2.0 519,027 + -2.9 519,028 - +0.6 519,028 - -2.0 519,100 + -1.4 519,168 + ABI39_RS01730 0.15 -0.8 519,226 + ABI39_RS01730 0.21 -0.3 519,434 + ABI39_RS01730 0.41 -0.8 519,608 + ABI39_RS01730 0.59 -0.2 519,609 - ABI39_RS01730 0.59 -0.3 519,612 + ABI39_RS01730 0.59 -3.2 519,670 + ABI39_RS01730 0.65 -0.6 519,670 + ABI39_RS01730 0.65 -0.8 519,703 + ABI39_RS01730 0.68 -1.6 519,860 - ABI39_RS01730 0.83 -2.3
Or see this region's nucleotide sequence