Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09815

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
2,631,828	-		ABI39_RS09810	0.56	-0.9
2,632,101	+		ABI39_RS09810	0.85	-0.5
2,632,142	-		ABI39_RS09810	0.90	-0.3
2,632,142	-		ABI39_RS09810	0.90	-0.1
2,632,325	+				-0.5
2,632,367	-				-0.5
2,632,409	-				+0.3
2,632,409	-				+0.6
2,632,552	-				-1.3
2,632,583	-				-0.5
2,632,661	+				+1.7
2,632,662	-				-0.8
2,632,664	-				-1.3
2,632,668	+				+0.3
2,632,668	+				-0.9
2,632,669	-				-0.5
2,632,788	-				-2.0
2,632,812	-				+0.1
2,633,014	-		ABI39_RS09815	0.12	-1.4
2,633,034	+		ABI39_RS09815	0.12	+0.3
2,633,132	-		ABI39_RS09815	0.14	-0.3
2,633,294	+		ABI39_RS09815	0.17	-1.2
2,633,353	+		ABI39_RS09815	0.18	+0.4
2,633,430	+		ABI39_RS09815	0.19	+0.1
2,633,492	+		ABI39_RS09815	0.20	-1.9
2,633,547	+		ABI39_RS09815	0.21	+0.0
2,633,699	+		ABI39_RS09815	0.24	-2.3
2,633,766	+		ABI39_RS09815	0.25	-0.8
2,633,925	+		ABI39_RS09815	0.28	-1.9
2,633,929	-		ABI39_RS09815	0.28	+0.2
2,634,010	+		ABI39_RS09815	0.29	-0.4
2,634,192	-		ABI39_RS09815	0.32	-1.5
2,634,225	-		ABI39_RS09815	0.33	-1.3
2,634,229	+		ABI39_RS09815	0.33	-0.8
2,634,361	+		ABI39_RS09815	0.35	-0.3
2,634,367	-		ABI39_RS09815	0.36	-0.7
2,634,371	+		ABI39_RS09815	0.36	+0.5
2,634,372	-		ABI39_RS09815	0.36	-1.5
2,634,372	-		ABI39_RS09815	0.36	-0.9
2,634,372	-		ABI39_RS09815	0.36	-0.0
2,634,385	-		ABI39_RS09815	0.36	-1.2
2,634,523	-		ABI39_RS09815	0.38	-0.1
2,634,524	+		ABI39_RS09815	0.38	+0.3
2,634,524	+		ABI39_RS09815	0.38	-1.2
2,634,524	+		ABI39_RS09815	0.38	-0.7
2,634,525	-		ABI39_RS09815	0.38	-1.1
2,634,525	-		ABI39_RS09815	0.38	-0.3
2,634,525	-		ABI39_RS09815	0.38	+0.1
2,634,825	-		ABI39_RS09815	0.44	-0.7
2,634,829	-		ABI39_RS09815	0.44	+0.9
2,635,007	+		ABI39_RS09815	0.47	-0.5
2,635,008	-		ABI39_RS09815	0.47	-0.3
2,635,009	+		ABI39_RS09815	0.47	-1.5
2,635,009	+		ABI39_RS09815	0.47	-0.0
2,635,009	+		ABI39_RS09815	0.47	-0.6
2,635,010	-		ABI39_RS09815	0.47	-0.5
2,635,011	+		ABI39_RS09815	0.47	-2.0
2,635,011	+		ABI39_RS09815	0.47	-0.1
2,635,011	+		ABI39_RS09815	0.47	-1.1
2,635,012	-		ABI39_RS09815	0.47	+0.8
2,635,013	+		ABI39_RS09815	0.47	-1.3
2,635,013	+		ABI39_RS09815	0.47	+0.5
2,635,013	+		ABI39_RS09815	0.47	+0.9
2,635,014	-		ABI39_RS09815	0.47	-1.4
2,635,014	-		ABI39_RS09815	0.47	+0.1
2,635,048	-		ABI39_RS09815	0.48	+0.5
2,635,192	-		ABI39_RS09815	0.50	-0.6
2,635,253	+		ABI39_RS09815	0.51	-0.7
2,635,307	-		ABI39_RS09815	0.52	+0.5
2,635,349	+		ABI39_RS09815	0.53	-0.2
2,635,356	+		ABI39_RS09815	0.53	-0.2
2,635,380	+		ABI39_RS09815	0.53	-0.3
2,635,380	+		ABI39_RS09815	0.53	-1.0
2,635,381	-		ABI39_RS09815	0.53	+1.3
2,635,392	-		ABI39_RS09815	0.54	-1.3
2,635,667	+		ABI39_RS09815	0.58	-1.0
2,635,756	+		ABI39_RS09815	0.60	-0.4
2,635,794	+		ABI39_RS09815	0.61	-1.2
2,635,889	+		ABI39_RS09815	0.62	-1.3
2,635,959	-		ABI39_RS09815	0.64	-0.3
2,636,083	+		ABI39_RS09815	0.66	-1.3
2,636,336	+		ABI39_RS09815	0.70	-0.7
2,636,490	-		ABI39_RS09815	0.73	-0.3
2,636,772	-		ABI39_RS09815	0.78	-0.6
2,636,867	+		ABI39_RS09815	0.80	-0.5
2,636,917	-		ABI39_RS09815	0.80	-0.6
2,636,918	+		ABI39_RS09815	0.80	-0.3
2,636,918	+		ABI39_RS09815	0.80	-0.4
2,636,985	+		ABI39_RS09815	0.82	-0.4
2,636,991	+		ABI39_RS09815	0.82	+0.1
2,636,992	-		ABI39_RS09815	0.82	-0.8
2,636,994	-		ABI39_RS09815	0.82	-0.4
2,637,172	-		ABI39_RS09815	0.85	-0.2
2,637,209	+		ABI39_RS09815	0.86	+0.9
2,637,216	-		ABI39_RS09815	0.86	-0.5
2,637,284	+		ABI39_RS09815	0.87	-0.2
2,637,391	+		ABI39_RS09815	0.89	-0.2
2,637,392	-		ABI39_RS09815	0.89	+1.3
2,637,446	+		ABI39_RS09815	0.90	-0.4
2,637,447	-		ABI39_RS09815	0.90	-1.7
2,637,530	+				-0.7
2,637,531	-				-1.3
2,637,606	-				-0.8
2,637,900	+				-0.9
2,637,922	-				+0.7
2,637,922	-				-0.0
2,637,975	+				+0.5
2,638,078	-				+0.0
2,638,085	+				+0.4
2,638,091	-				-0.3
2,638,204	-		ABI39_RS09820	0.27	+0.1
2,638,218	-		ABI39_RS09820	0.31	-0.5
2,638,222	+		ABI39_RS09820	0.32	-0.1
2,638,261	-		ABI39_RS09820	0.40	+0.0
2,638,263	-		ABI39_RS09820	0.41	-0.0
2,638,344	+		ABI39_RS09820	0.59	+0.7
2,638,349	+		ABI39_RS09820	0.61	+0.1
2,638,355	+		ABI39_RS09820	0.62	-0.8
2,638,412	+		ABI39_RS09820	0.75	-0.8
2,638,413	-		ABI39_RS09820	0.75	-0.5
2,638,514	-				-0.1
2,638,521	+				-0.8
2,638,661	-				-0.7
2,638,704	+				+0.1
2,638,732	+				-0.4
2,638,824	+		ABI39_RS09825	0.16	-0.1
2,638,984	+		ABI39_RS09825	0.31	+0.8