Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00815

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00810 and ABI39_RS00815 are separated by 12 nucleotidesABI39_RS00815 and ABI39_RS00820 overlap by 4 nucleotides ABI39_RS00810: ABI39_RS00810 - glycoside hydrolase family 88 protein, at 244,147 to 245,562 _RS00810 ABI39_RS00815: ABI39_RS00815 - rhamnogalacturonan lyase, at 245,575 to 247,482 _RS00815 ABI39_RS00820: ABI39_RS00820 - glycoside hydrolase family 28 protein, at 247,479 to 248,867 _RS00820 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2at 244.594 kb on + strand, within ABI39_RS00810at 244.595 kb on - strand, within ABI39_RS00810at 244.672 kb on - strand, within ABI39_RS00810at 244.776 kb on + strand, within ABI39_RS00810at 244.821 kb on - strand, within ABI39_RS00810at 244.902 kb on + strand, within ABI39_RS00810at 244.902 kb on + strand, within ABI39_RS00810at 244.976 kb on + strand, within ABI39_RS00810at 245.101 kb on + strand, within ABI39_RS00810at 245.178 kb on - strand, within ABI39_RS00810at 245.181 kb on + strand, within ABI39_RS00810at 245.181 kb on + strand, within ABI39_RS00810at 245.187 kb on - strand, within ABI39_RS00810at 245.223 kb on + strand, within ABI39_RS00810at 245.323 kb on - strand, within ABI39_RS00810at 245.328 kb on + strand, within ABI39_RS00810at 245.398 kb on + strand, within ABI39_RS00810at 245.423 kb on + strandat 245.480 kb on - strandat 245.545 kb on + strandat 245.567 kb on + strandat 245.750 kb on + strandat 245.751 kb on - strandat 245.813 kb on - strand, within ABI39_RS00815at 245.813 kb on - strand, within ABI39_RS00815at 245.814 kb on + strand, within ABI39_RS00815at 245.815 kb on - strand, within ABI39_RS00815at 245.890 kb on + strand, within ABI39_RS00815at 245.890 kb on + strand, within ABI39_RS00815at 245.891 kb on - strand, within ABI39_RS00815at 245.891 kb on - strand, within ABI39_RS00815at 245.910 kb on - strand, within ABI39_RS00815at 246.019 kb on + strand, within ABI39_RS00815at 246.019 kb on + strand, within ABI39_RS00815at 246.020 kb on - strand, within ABI39_RS00815at 246.021 kb on + strand, within ABI39_RS00815at 246.094 kb on - strand, within ABI39_RS00815at 246.104 kb on - strand, within ABI39_RS00815at 246.109 kb on + strand, within ABI39_RS00815at 246.241 kb on - strand, within ABI39_RS00815at 246.259 kb on - strand, within ABI39_RS00815at 246.270 kb on - strand, within ABI39_RS00815at 246.270 kb on - strand, within ABI39_RS00815at 246.378 kb on - strand, within ABI39_RS00815at 246.473 kb on + strand, within ABI39_RS00815at 246.502 kb on + strand, within ABI39_RS00815at 246.596 kb on + strand, within ABI39_RS00815at 246.597 kb on - strand, within ABI39_RS00815at 246.597 kb on - strand, within ABI39_RS00815at 246.647 kb on + strand, within ABI39_RS00815at 246.688 kb on - strand, within ABI39_RS00815at 246.688 kb on - strand, within ABI39_RS00815at 246.688 kb on - strand, within ABI39_RS00815at 246.843 kb on + strand, within ABI39_RS00815at 246.846 kb on - strand, within ABI39_RS00815at 246.868 kb on - strand, within ABI39_RS00815at 246.904 kb on - strand, within ABI39_RS00815at 246.987 kb on + strand, within ABI39_RS00815at 246.987 kb on + strand, within ABI39_RS00815at 247.021 kb on + strand, within ABI39_RS00815at 247.024 kb on - strand, within ABI39_RS00815at 247.043 kb on + strand, within ABI39_RS00815at 247.043 kb on + strand, within ABI39_RS00815at 247.043 kb on + strand, within ABI39_RS00815at 247.044 kb on - strand, within ABI39_RS00815at 247.044 kb on - strand, within ABI39_RS00815at 247.106 kb on + strand, within ABI39_RS00815at 247.188 kb on + strand, within ABI39_RS00815at 247.280 kb on - strand, within ABI39_RS00815at 247.294 kb on - strandat 247.333 kb on + strandat 247.400 kb on + strandat 247.505 kb on - strandat 247.709 kb on + strand, within ABI39_RS00820at 247.885 kb on + strand, within ABI39_RS00820at 247.962 kb on + strand, within ABI39_RS00820at 248.125 kb on - strand, within ABI39_RS00820at 248.125 kb on - strand, within ABI39_RS00820at 248.159 kb on + strand, within ABI39_RS00820at 248.159 kb on + strand, within ABI39_RS00820at 248.162 kb on - strand, within ABI39_RS00820at 248.169 kb on + strand, within ABI39_RS00820at 248.170 kb on - strand, within ABI39_RS00820at 248.239 kb on - strand, within ABI39_RS00820at 248.385 kb on - strand, within ABI39_RS00820at 248.438 kb on - strand, within ABI39_RS00820at 248.453 kb on - strand, within ABI39_RS00820at 248.459 kb on - strand, within ABI39_RS00820

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
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244,594 + ABI39_RS00810 0.32 +0.5
244,595 - ABI39_RS00810 0.32 -0.2
244,672 - ABI39_RS00810 0.37 -0.3
244,776 + ABI39_RS00810 0.44 +1.1
244,821 - ABI39_RS00810 0.48 -0.2
244,902 + ABI39_RS00810 0.53 +0.0
244,902 + ABI39_RS00810 0.53 +0.5
244,976 + ABI39_RS00810 0.59 -0.6
245,101 + ABI39_RS00810 0.67 -0.4
245,178 - ABI39_RS00810 0.73 -1.1
245,181 + ABI39_RS00810 0.73 -0.9
245,181 + ABI39_RS00810 0.73 -0.5
245,187 - ABI39_RS00810 0.73 +0.1
245,223 + ABI39_RS00810 0.76 -0.4
245,323 - ABI39_RS00810 0.83 +0.9
245,328 + ABI39_RS00810 0.83 -0.7
245,398 + ABI39_RS00810 0.88 -0.2
245,423 + +0.6
245,480 - -1.8
245,545 + -0.0
245,567 + +0.2
245,750 + -0.2
245,751 - +1.5
245,813 - ABI39_RS00815 0.12 +0.1
245,813 - ABI39_RS00815 0.12 +0.2
245,814 + ABI39_RS00815 0.13 +0.1
245,815 - ABI39_RS00815 0.13 -0.2
245,890 + ABI39_RS00815 0.17 +1.8
245,890 + ABI39_RS00815 0.17 -2.5
245,891 - ABI39_RS00815 0.17 -0.8
245,891 - ABI39_RS00815 0.17 +0.2
245,910 - ABI39_RS00815 0.18 +0.7
246,019 + ABI39_RS00815 0.23 -0.6
246,019 + ABI39_RS00815 0.23 +0.5
246,020 - ABI39_RS00815 0.23 -0.3
246,021 + ABI39_RS00815 0.23 -1.6
246,094 - ABI39_RS00815 0.27 -1.1
246,104 - ABI39_RS00815 0.28 -0.0
246,109 + ABI39_RS00815 0.28 -0.6
246,241 - ABI39_RS00815 0.35 -0.9
246,259 - ABI39_RS00815 0.36 +0.2
246,270 - ABI39_RS00815 0.36 -0.3
246,270 - ABI39_RS00815 0.36 +0.1
246,378 - ABI39_RS00815 0.42 -0.1
246,473 + ABI39_RS00815 0.47 -1.0
246,502 + ABI39_RS00815 0.49 +0.5
246,596 + ABI39_RS00815 0.54 +0.4
246,597 - ABI39_RS00815 0.54 +1.4
246,597 - ABI39_RS00815 0.54 +0.8
246,647 + ABI39_RS00815 0.56 +0.2
246,688 - ABI39_RS00815 0.58 -1.0
246,688 - ABI39_RS00815 0.58 +1.0
246,688 - ABI39_RS00815 0.58 +0.2
246,843 + ABI39_RS00815 0.66 -0.9
246,846 - ABI39_RS00815 0.67 -0.9
246,868 - ABI39_RS00815 0.68 +0.4
246,904 - ABI39_RS00815 0.70 +0.8
246,987 + ABI39_RS00815 0.74 +0.8
246,987 + ABI39_RS00815 0.74 -1.8
247,021 + ABI39_RS00815 0.76 +0.5
247,024 - ABI39_RS00815 0.76 -0.3
247,043 + ABI39_RS00815 0.77 -1.3
247,043 + ABI39_RS00815 0.77 +0.5
247,043 + ABI39_RS00815 0.77 +0.2
247,044 - ABI39_RS00815 0.77 +2.5
247,044 - ABI39_RS00815 0.77 +1.2
247,106 + ABI39_RS00815 0.80 +1.2
247,188 + ABI39_RS00815 0.85 +1.1
247,280 - ABI39_RS00815 0.89 -1.6
247,294 - -1.1
247,333 + +0.7
247,400 + -1.2
247,505 - +0.6
247,709 + ABI39_RS00820 0.17 +0.2
247,885 + ABI39_RS00820 0.29 -0.5
247,962 + ABI39_RS00820 0.35 +0.4
248,125 - ABI39_RS00820 0.47 +0.2
248,125 - ABI39_RS00820 0.47 -1.3
248,159 + ABI39_RS00820 0.49 +0.8
248,159 + ABI39_RS00820 0.49 -0.3
248,162 - ABI39_RS00820 0.49 +1.0
248,169 + ABI39_RS00820 0.50 -0.5
248,170 - ABI39_RS00820 0.50 +0.2
248,239 - ABI39_RS00820 0.55 -0.7
248,385 - ABI39_RS00820 0.65 +1.5
248,438 - ABI39_RS00820 0.69 -1.0
248,453 - ABI39_RS00820 0.70 -0.9
248,459 - ABI39_RS00820 0.71 +0.6

Or see this region's nucleotide sequence