Strain Fitness in Escherichia coli ECRC101 around MCAODC_27090

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntallD and allC are separated by 21 nucleotidesallC and allE are separated by 10 nucleotides MCAODC_27085: allD - ureidoglycolate dehydrogenase, at 2,141,930 to 2,142,979 allD MCAODC_27090: allC - allantoate deiminase, at 2,143,001 to 2,144,236 allC MCAODC_27095: allE - (S)-ureidoglycine aminohydrolase, at 2,144,247 to 2,145,032 allE Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2142.025 kb on - strandat 2142.080 kb on + strand, within allDat 2142.081 kb on - strand, within allDat 2142.081 kb on - strand, within allDat 2142.165 kb on + strand, within allDat 2142.293 kb on + strand, within allDat 2142.293 kb on + strand, within allDat 2142.293 kb on + strand, within allDat 2142.324 kb on + strand, within allDat 2142.389 kb on + strand, within allDat 2142.389 kb on + strand, within allDat 2142.390 kb on - strand, within allDat 2142.390 kb on - strand, within allDat 2142.394 kb on + strand, within allDat 2142.443 kb on - strand, within allDat 2142.451 kb on + strand, within allDat 2142.460 kb on + strand, within allDat 2142.465 kb on + strand, within allDat 2142.503 kb on - strand, within allDat 2142.505 kb on + strand, within allDat 2142.505 kb on + strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.506 kb on - strand, within allDat 2142.520 kb on + strand, within allDat 2142.570 kb on + strand, within allDat 2142.570 kb on + strand, within allDat 2142.571 kb on - strand, within allDat 2142.673 kb on + strand, within allDat 2142.674 kb on - strand, within allDat 2142.684 kb on - strand, within allDat 2142.907 kb on + strandat 2142.950 kb on + strandat 2142.951 kb on - strandat 2143.185 kb on + strand, within allCat 2143.185 kb on + strand, within allCat 2143.186 kb on - strand, within allCat 2143.189 kb on - strand, within allCat 2143.385 kb on - strand, within allCat 2143.457 kb on - strand, within allCat 2143.550 kb on - strand, within allCat 2143.550 kb on - strand, within allCat 2143.597 kb on + strand, within allCat 2143.646 kb on + strand, within allCat 2143.648 kb on + strand, within allCat 2143.648 kb on + strand, within allCat 2143.649 kb on - strand, within allCat 2143.711 kb on + strand, within allCat 2143.719 kb on - strand, within allCat 2143.816 kb on + strand, within allCat 2143.837 kb on + strand, within allCat 2143.905 kb on + strand, within allCat 2143.906 kb on - strand, within allCat 2143.906 kb on - strand, within allCat 2143.948 kb on + strand, within allCat 2143.955 kb on - strand, within allCat 2144.114 kb on - strandat 2144.167 kb on + strandat 2144.168 kb on - strandat 2144.244 kb on + strandat 2144.244 kb on + strandat 2144.245 kb on - strandat 2144.257 kb on + strandat 2144.257 kb on + strandat 2144.258 kb on - strandat 2144.258 kb on - strandat 2144.258 kb on - strandat 2144.288 kb on - strandat 2144.295 kb on - strandat 2144.332 kb on + strand, within allEat 2144.333 kb on - strand, within allEat 2144.361 kb on - strand, within allEat 2144.520 kb on - strand, within allEat 2144.554 kb on + strand, within allEat 2144.575 kb on - strand, within allEat 2144.575 kb on - strand, within allEat 2144.639 kb on - strand, within allEat 2144.641 kb on - strand, within allEat 2144.643 kb on - strand, within allEat 2144.643 kb on - strand, within allEat 2144.643 kb on - strand, within allEat 2144.721 kb on + strand, within allEat 2144.729 kb on + strand, within allEat 2144.730 kb on - strand, within allEat 2144.730 kb on - strand, within allEat 2144.826 kb on + strand, within allEat 2144.883 kb on + strand, within allEat 2144.883 kb on + strand, within allEat 2144.884 kb on - strand, within allEat 2144.925 kb on + strand, within allEat 2144.991 kb on + strandat 2144.993 kb on + strandat 2145.022 kb on + strandat 2145.030 kb on + strandat 2145.030 kb on + strandat 2145.031 kb on - strandat 2145.062 kb on + strandat 2145.062 kb on + strandat 2145.062 kb on + strandat 2145.062 kb on + strandat 2145.062 kb on + strandat 2145.063 kb on - strandat 2145.084 kb on + strandat 2145.109 kb on - strandat 2145.136 kb on + strandat 2145.137 kb on - strandat 2145.152 kb on + strandat 2145.152 kb on + strandat 2145.154 kb on + strandat 2145.213 kb on - strandat 2145.213 kb on - strandat 2145.224 kb on - strandat 2145.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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2,142,025 - +0.9
2,142,080 + allD MCAODC_27085 0.14 -1.5
2,142,081 - allD MCAODC_27085 0.14 +0.2
2,142,081 - allD MCAODC_27085 0.14 +0.4
2,142,165 + allD MCAODC_27085 0.22 +0.7
2,142,293 + allD MCAODC_27085 0.35 -0.3
2,142,293 + allD MCAODC_27085 0.35 +1.3
2,142,293 + allD MCAODC_27085 0.35 +1.8
2,142,324 + allD MCAODC_27085 0.38 -1.5
2,142,389 + allD MCAODC_27085 0.44 -1.3
2,142,389 + allD MCAODC_27085 0.44 +0.6
2,142,390 - allD MCAODC_27085 0.44 -0.1
2,142,390 - allD MCAODC_27085 0.44 -0.7
2,142,394 + allD MCAODC_27085 0.44 +0.8
2,142,443 - allD MCAODC_27085 0.49 +1.6
2,142,451 + allD MCAODC_27085 0.50 -0.1
2,142,460 + allD MCAODC_27085 0.50 +1.6
2,142,465 + allD MCAODC_27085 0.51 +1.6
2,142,503 - allD MCAODC_27085 0.55 -0.5
2,142,505 + allD MCAODC_27085 0.55 +0.9
2,142,505 + allD MCAODC_27085 0.55 -3.2
2,142,506 - allD MCAODC_27085 0.55 +0.7
2,142,506 - allD MCAODC_27085 0.55 -0.5
2,142,506 - allD MCAODC_27085 0.55 +0.7
2,142,506 - allD MCAODC_27085 0.55 -0.3
2,142,506 - allD MCAODC_27085 0.55 +3.2
2,142,506 - allD MCAODC_27085 0.55 +0.7
2,142,506 - allD MCAODC_27085 0.55 -1.1
2,142,506 - allD MCAODC_27085 0.55 +0.9
2,142,506 - allD MCAODC_27085 0.55 -0.3
2,142,520 + allD MCAODC_27085 0.56 +0.0
2,142,570 + allD MCAODC_27085 0.61 -0.6
2,142,570 + allD MCAODC_27085 0.61 +0.7
2,142,571 - allD MCAODC_27085 0.61 -0.5
2,142,673 + allD MCAODC_27085 0.71 +2.4
2,142,674 - allD MCAODC_27085 0.71 +0.0
2,142,684 - allD MCAODC_27085 0.72 +0.9
2,142,907 + +2.3
2,142,950 + -0.3
2,142,951 - -0.4
2,143,185 + allC MCAODC_27090 0.15 +2.2
2,143,185 + allC MCAODC_27090 0.15 -0.3
2,143,186 - allC MCAODC_27090 0.15 +0.1
2,143,189 - allC MCAODC_27090 0.15 -1.1
2,143,385 - allC MCAODC_27090 0.31 -0.4
2,143,457 - allC MCAODC_27090 0.37 +0.6
2,143,550 - allC MCAODC_27090 0.44 +1.7
2,143,550 - allC MCAODC_27090 0.44 -0.9
2,143,597 + allC MCAODC_27090 0.48 +0.4
2,143,646 + allC MCAODC_27090 0.52 +1.8
2,143,648 + allC MCAODC_27090 0.52 +0.6
2,143,648 + allC MCAODC_27090 0.52 -0.8
2,143,649 - allC MCAODC_27090 0.52 +2.4
2,143,711 + allC MCAODC_27090 0.57 -0.3
2,143,719 - allC MCAODC_27090 0.58 -0.2
2,143,816 + allC MCAODC_27090 0.66 +1.2
2,143,837 + allC MCAODC_27090 0.68 +0.6
2,143,905 + allC MCAODC_27090 0.73 -0.7
2,143,906 - allC MCAODC_27090 0.73 +1.2
2,143,906 - allC MCAODC_27090 0.73 +0.2
2,143,948 + allC MCAODC_27090 0.77 -1.9
2,143,955 - allC MCAODC_27090 0.77 -0.0
2,144,114 - +0.8
2,144,167 + -0.2
2,144,168 - -1.6
2,144,244 + +0.3
2,144,244 + +0.0
2,144,245 - -0.3
2,144,257 + +1.4
2,144,257 + +0.2
2,144,258 - -0.3
2,144,258 - -0.0
2,144,258 - -1.3
2,144,288 - +1.7
2,144,295 - +0.2
2,144,332 + allE MCAODC_27095 0.11 -0.4
2,144,333 - allE MCAODC_27095 0.11 -1.5
2,144,361 - allE MCAODC_27095 0.15 +0.1
2,144,520 - allE MCAODC_27095 0.35 +0.6
2,144,554 + allE MCAODC_27095 0.39 -1.6
2,144,575 - allE MCAODC_27095 0.42 +0.2
2,144,575 - allE MCAODC_27095 0.42 +0.6
2,144,639 - allE MCAODC_27095 0.50 +0.0
2,144,641 - allE MCAODC_27095 0.50 -0.3
2,144,643 - allE MCAODC_27095 0.50 -0.1
2,144,643 - allE MCAODC_27095 0.50 -0.7
2,144,643 - allE MCAODC_27095 0.50 -1.4
2,144,721 + allE MCAODC_27095 0.60 -0.0
2,144,729 + allE MCAODC_27095 0.61 -0.3
2,144,730 - allE MCAODC_27095 0.61 +0.7
2,144,730 - allE MCAODC_27095 0.61 -1.3
2,144,826 + allE MCAODC_27095 0.74 +1.4
2,144,883 + allE MCAODC_27095 0.81 +0.3
2,144,883 + allE MCAODC_27095 0.81 +0.7
2,144,884 - allE MCAODC_27095 0.81 -0.3
2,144,925 + allE MCAODC_27095 0.86 -1.8
2,144,991 + -1.2
2,144,993 + -0.7
2,145,022 + -1.4
2,145,030 + +0.6
2,145,030 + -1.3
2,145,031 - +0.9
2,145,062 + +0.1
2,145,062 + +0.1
2,145,062 + +0.6
2,145,062 + -0.9
2,145,062 + -0.4
2,145,063 - -2.1
2,145,084 + +0.7
2,145,109 - -0.4
2,145,136 + +0.2
2,145,137 - -0.3
2,145,152 + -1.4
2,145,152 + +0.0
2,145,154 + -1.0
2,145,213 - +0.1
2,145,213 - +0.7
2,145,224 - -0.2
2,145,233 - -0.6

Or see this region's nucleotide sequence