Strain Fitness in Escherichia coli ECRC101 around MCAODC_25945

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalT and galK are separated by 3 nucleotidesgalK and galM overlap by 7 nucleotides MCAODC_25940: galT - galactose-1-phosphate uridylyltransferase, at 1,905,806 to 1,906,852 galT MCAODC_25945: galK - galactokinase, at 1,906,856 to 1,908,004 galK MCAODC_25950: galM - galactose-1-epimerase, at 1,907,998 to 1,909,038 galM Position (kb) 1906 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1905.892 kb on + strandat 1905.939 kb on + strand, within galTat 1905.976 kb on + strand, within galTat 1906.010 kb on + strand, within galTat 1906.022 kb on + strand, within galTat 1906.034 kb on - strand, within galTat 1906.153 kb on + strand, within galTat 1906.321 kb on + strand, within galTat 1906.321 kb on + strand, within galTat 1906.322 kb on - strand, within galTat 1906.506 kb on + strand, within galTat 1906.636 kb on + strand, within galTat 1906.637 kb on - strand, within galTat 1906.661 kb on - strand, within galTat 1906.732 kb on - strand, within galTat 1906.736 kb on - strand, within galTat 1906.741 kb on + strand, within galTat 1906.741 kb on + strand, within galTat 1906.850 kb on + strandat 1907.003 kb on + strand, within galKat 1907.004 kb on - strand, within galKat 1907.066 kb on + strand, within galKat 1907.123 kb on + strand, within galKat 1907.124 kb on - strand, within galKat 1907.138 kb on + strand, within galKat 1907.138 kb on + strand, within galKat 1907.138 kb on + strand, within galKat 1907.139 kb on - strand, within galKat 1907.139 kb on - strand, within galKat 1907.173 kb on + strand, within galKat 1907.174 kb on - strand, within galKat 1907.275 kb on - strand, within galKat 1907.360 kb on - strand, within galKat 1907.360 kb on - strand, within galKat 1907.491 kb on + strand, within galKat 1907.503 kb on + strand, within galKat 1907.522 kb on + strand, within galKat 1907.522 kb on + strand, within galKat 1907.522 kb on + strand, within galKat 1907.523 kb on - strand, within galKat 1907.755 kb on + strand, within galKat 1907.803 kb on - strand, within galKat 1907.841 kb on + strand, within galKat 1907.872 kb on + strand, within galKat 1907.911 kb on - strandat 1907.933 kb on + strandat 1907.953 kb on + strandat 1908.050 kb on + strandat 1908.077 kb on + strandat 1908.078 kb on - strandat 1908.213 kb on + strand, within galMat 1908.214 kb on - strand, within galMat 1908.214 kb on - strand, within galMat 1908.214 kb on - strand, within galMat 1908.223 kb on + strand, within galMat 1908.252 kb on + strand, within galMat 1908.252 kb on + strand, within galMat 1908.253 kb on - strand, within galMat 1908.253 kb on - strand, within galMat 1908.253 kb on - strand, within galMat 1908.462 kb on + strand, within galMat 1908.462 kb on + strand, within galMat 1908.463 kb on - strand, within galMat 1908.463 kb on - strand, within galMat 1908.476 kb on - strand, within galMat 1908.492 kb on + strand, within galMat 1908.510 kb on + strand, within galMat 1908.517 kb on - strand, within galMat 1908.526 kb on + strand, within galMat 1908.746 kb on + strand, within galMat 1908.859 kb on + strand, within galMat 1908.860 kb on - strand, within galMat 1908.860 kb on - strand, within galMat 1908.896 kb on - strand, within galMat 1909.000 kb on + strandat 1909.000 kb on + strandat 1909.001 kb on - strandat 1909.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,905,892 + +0.4
1,905,939 + galT MCAODC_25940 0.13 -0.7
1,905,976 + galT MCAODC_25940 0.16 +0.2
1,906,010 + galT MCAODC_25940 0.19 -1.1
1,906,022 + galT MCAODC_25940 0.21 -0.7
1,906,034 - galT MCAODC_25940 0.22 +0.1
1,906,153 + galT MCAODC_25940 0.33 -1.5
1,906,321 + galT MCAODC_25940 0.49 -1.0
1,906,321 + galT MCAODC_25940 0.49 +0.5
1,906,322 - galT MCAODC_25940 0.49 -1.3
1,906,506 + galT MCAODC_25940 0.67 -1.7
1,906,636 + galT MCAODC_25940 0.79 +0.8
1,906,637 - galT MCAODC_25940 0.79 -0.9
1,906,661 - galT MCAODC_25940 0.82 -0.6
1,906,732 - galT MCAODC_25940 0.88 +1.3
1,906,736 - galT MCAODC_25940 0.89 -0.4
1,906,741 + galT MCAODC_25940 0.89 +1.3
1,906,741 + galT MCAODC_25940 0.89 -0.7
1,906,850 + -1.3
1,907,003 + galK MCAODC_25945 0.13 -2.5
1,907,004 - galK MCAODC_25945 0.13 -0.4
1,907,066 + galK MCAODC_25945 0.18 +0.4
1,907,123 + galK MCAODC_25945 0.23 +1.0
1,907,124 - galK MCAODC_25945 0.23 -0.5
1,907,138 + galK MCAODC_25945 0.25 +2.1
1,907,138 + galK MCAODC_25945 0.25 +0.2
1,907,138 + galK MCAODC_25945 0.25 +1.1
1,907,139 - galK MCAODC_25945 0.25 +0.3
1,907,139 - galK MCAODC_25945 0.25 +0.2
1,907,173 + galK MCAODC_25945 0.28 -0.8
1,907,174 - galK MCAODC_25945 0.28 +0.2
1,907,275 - galK MCAODC_25945 0.36 +0.5
1,907,360 - galK MCAODC_25945 0.44 +3.2
1,907,360 - galK MCAODC_25945 0.44 -1.4
1,907,491 + galK MCAODC_25945 0.55 -0.4
1,907,503 + galK MCAODC_25945 0.56 +0.6
1,907,522 + galK MCAODC_25945 0.58 -0.0
1,907,522 + galK MCAODC_25945 0.58 +0.4
1,907,522 + galK MCAODC_25945 0.58 -2.6
1,907,523 - galK MCAODC_25945 0.58 -1.1
1,907,755 + galK MCAODC_25945 0.78 -1.6
1,907,803 - galK MCAODC_25945 0.82 +0.4
1,907,841 + galK MCAODC_25945 0.86 +0.5
1,907,872 + galK MCAODC_25945 0.88 +0.5
1,907,911 - -0.6
1,907,933 + -0.4
1,907,953 + -0.5
1,908,050 + +0.5
1,908,077 + -0.2
1,908,078 - -0.2
1,908,213 + galM MCAODC_25950 0.21 -0.9
1,908,214 - galM MCAODC_25950 0.21 -1.4
1,908,214 - galM MCAODC_25950 0.21 +0.3
1,908,214 - galM MCAODC_25950 0.21 +1.3
1,908,223 + galM MCAODC_25950 0.22 +1.1
1,908,252 + galM MCAODC_25950 0.24 -0.3
1,908,252 + galM MCAODC_25950 0.24 -0.7
1,908,253 - galM MCAODC_25950 0.24 -0.1
1,908,253 - galM MCAODC_25950 0.24 +0.4
1,908,253 - galM MCAODC_25950 0.24 -0.1
1,908,462 + galM MCAODC_25950 0.45 -0.6
1,908,462 + galM MCAODC_25950 0.45 -0.9
1,908,463 - galM MCAODC_25950 0.45 +0.5
1,908,463 - galM MCAODC_25950 0.45 -1.4
1,908,476 - galM MCAODC_25950 0.46 +1.2
1,908,492 + galM MCAODC_25950 0.47 -0.4
1,908,510 + galM MCAODC_25950 0.49 +1.3
1,908,517 - galM MCAODC_25950 0.50 +0.2
1,908,526 + galM MCAODC_25950 0.51 -0.9
1,908,746 + galM MCAODC_25950 0.72 -1.2
1,908,859 + galM MCAODC_25950 0.83 +1.9
1,908,860 - galM MCAODC_25950 0.83 -0.3
1,908,860 - galM MCAODC_25950 0.83 +0.8
1,908,896 - galM MCAODC_25950 0.86 -0.1
1,909,000 + -0.7
1,909,000 + +0.4
1,909,001 - +0.4
1,909,001 - +1.5

Or see this region's nucleotide sequence