Strain Fitness in Escherichia coli ECRC101 around MCAODC_24820

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcmoM and elyC are separated by 135 nucleotideselyC and ycbJ overlap by 24 nucleotidesycbJ and kdsB are separated by 153 nucleotideskdsB and ycaR overlap by 4 nucleotides MCAODC_24810: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 1,676,748 to 1,677,533 cmoM MCAODC_24815: elyC - envelope biogenesis factor ElyC, at 1,677,669 to 1,678,448 elyC MCAODC_24820: ycbJ - Uncharacterized protein YcbJ, at 1,678,425 to 1,679,318 ycbJ MCAODC_24825: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 1,679,472 to 1,680,218 kdsB MCAODC_24830: ycaR - protein YcaR, at 1,680,215 to 1,680,397 ycaR Position (kb) 1678 1679 1680Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1677.482 kb on - strandat 1677.482 kb on - strandat 1677.489 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.621 kb on + strandat 1677.621 kb on + strandat 1677.622 kb on - strandat 1677.622 kb on - strandat 1677.622 kb on - strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.643 kb on + strandat 1677.643 kb on + strandat 1677.643 kb on + strandat 1677.644 kb on - strandat 1677.644 kb on - strandat 1677.677 kb on + strandat 1677.678 kb on - strandat 1677.678 kb on - strandat 1677.701 kb on + strandat 1677.730 kb on + strandat 1677.730 kb on + strandat 1677.731 kb on - strandat 1677.731 kb on - strandat 1677.794 kb on + strand, within elyCat 1677.794 kb on + strand, within elyCat 1677.823 kb on + strand, within elyCat 1677.909 kb on + strand, within elyCat 1677.909 kb on + strand, within elyCat 1677.909 kb on + strand, within elyCat 1677.909 kb on + strand, within elyCat 1677.911 kb on + strand, within elyCat 1677.911 kb on + strand, within elyCat 1677.912 kb on - strand, within elyCat 1677.933 kb on + strand, within elyCat 1677.935 kb on + strand, within elyCat 1677.966 kb on - strand, within elyCat 1678.012 kb on + strand, within elyCat 1678.012 kb on + strand, within elyCat 1678.012 kb on + strand, within elyCat 1678.079 kb on + strand, within elyCat 1678.090 kb on + strand, within elyCat 1678.090 kb on + strand, within elyCat 1678.136 kb on + strand, within elyCat 1678.136 kb on + strand, within elyCat 1678.137 kb on - strand, within elyCat 1678.283 kb on - strand, within elyCat 1678.367 kb on + strand, within elyCat 1678.368 kb on - strand, within elyCat 1678.478 kb on + strandat 1678.490 kb on + strandat 1678.525 kb on + strand, within ycbJat 1678.525 kb on + strand, within ycbJat 1678.526 kb on - strand, within ycbJat 1678.526 kb on - strand, within ycbJat 1678.526 kb on - strand, within ycbJat 1678.526 kb on - strand, within ycbJat 1678.526 kb on - strand, within ycbJat 1678.576 kb on + strand, within ycbJat 1678.608 kb on - strand, within ycbJat 1678.653 kb on + strand, within ycbJat 1678.654 kb on - strand, within ycbJat 1678.678 kb on - strand, within ycbJat 1678.764 kb on + strand, within ycbJat 1678.764 kb on + strand, within ycbJat 1678.765 kb on - strand, within ycbJat 1678.805 kb on + strand, within ycbJat 1678.830 kb on - strand, within ycbJat 1678.854 kb on + strand, within ycbJat 1678.904 kb on + strand, within ycbJat 1678.904 kb on + strand, within ycbJat 1678.905 kb on - strand, within ycbJat 1679.092 kb on + strand, within ycbJat 1679.105 kb on + strand, within ycbJat 1679.105 kb on + strand, within ycbJat 1679.105 kb on + strand, within ycbJat 1679.105 kb on + strand, within ycbJat 1679.171 kb on + strand, within ycbJat 1679.174 kb on + strand, within ycbJat 1679.218 kb on + strand, within ycbJat 1679.286 kb on + strandat 1679.286 kb on + strandat 1679.366 kb on + strandat 1679.366 kb on + strandat 1679.367 kb on - strandat 1679.428 kb on + strandat 1679.428 kb on + strandat 1679.428 kb on + strandat 1679.429 kb on - strandat 1679.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,677,482 - -1.1
1,677,482 - -0.9
1,677,489 - +0.4
1,677,619 - -1.0
1,677,619 - -0.9
1,677,619 - -0.5
1,677,619 - +0.1
1,677,621 + -0.8
1,677,621 + +1.4
1,677,622 - -1.6
1,677,622 - +0.1
1,677,622 - +0.5
1,677,641 + +0.4
1,677,641 + -0.5
1,677,641 + -0.9
1,677,641 + -0.4
1,677,642 - -0.2
1,677,642 - -0.3
1,677,642 - -0.2
1,677,642 - -1.1
1,677,642 - +1.2
1,677,642 - +1.1
1,677,643 + +0.2
1,677,643 + -1.9
1,677,643 + +1.7
1,677,644 - +1.0
1,677,644 - +0.2
1,677,677 + -0.5
1,677,678 - +2.8
1,677,678 - +0.0
1,677,701 + +1.3
1,677,730 + +0.7
1,677,730 + -0.7
1,677,731 - -0.0
1,677,731 - -0.6
1,677,794 + elyC MCAODC_24815 0.16 +1.3
1,677,794 + elyC MCAODC_24815 0.16 +0.9
1,677,823 + elyC MCAODC_24815 0.20 -0.4
1,677,909 + elyC MCAODC_24815 0.31 -0.4
1,677,909 + elyC MCAODC_24815 0.31 +0.8
1,677,909 + elyC MCAODC_24815 0.31 +0.8
1,677,909 + elyC MCAODC_24815 0.31 -1.4
1,677,911 + elyC MCAODC_24815 0.31 -0.9
1,677,911 + elyC MCAODC_24815 0.31 -0.2
1,677,912 - elyC MCAODC_24815 0.31 +0.8
1,677,933 + elyC MCAODC_24815 0.34 +0.2
1,677,935 + elyC MCAODC_24815 0.34 -1.2
1,677,966 - elyC MCAODC_24815 0.38 +0.9
1,678,012 + elyC MCAODC_24815 0.44 -0.0
1,678,012 + elyC MCAODC_24815 0.44 -0.2
1,678,012 + elyC MCAODC_24815 0.44 -1.4
1,678,079 + elyC MCAODC_24815 0.53 +0.1
1,678,090 + elyC MCAODC_24815 0.54 -1.2
1,678,090 + elyC MCAODC_24815 0.54 -0.3
1,678,136 + elyC MCAODC_24815 0.60 -0.1
1,678,136 + elyC MCAODC_24815 0.60 +0.4
1,678,137 - elyC MCAODC_24815 0.60 +3.8
1,678,283 - elyC MCAODC_24815 0.79 -0.8
1,678,367 + elyC MCAODC_24815 0.89 +0.5
1,678,368 - elyC MCAODC_24815 0.90 +0.5
1,678,478 + +1.4
1,678,490 + +1.0
1,678,525 + ycbJ MCAODC_24820 0.11 +0.8
1,678,525 + ycbJ MCAODC_24820 0.11 +0.5
1,678,526 - ycbJ MCAODC_24820 0.11 +2.2
1,678,526 - ycbJ MCAODC_24820 0.11 +1.2
1,678,526 - ycbJ MCAODC_24820 0.11 -1.2
1,678,526 - ycbJ MCAODC_24820 0.11 -0.9
1,678,526 - ycbJ MCAODC_24820 0.11 -0.1
1,678,576 + ycbJ MCAODC_24820 0.17 -0.8
1,678,608 - ycbJ MCAODC_24820 0.20 +1.2
1,678,653 + ycbJ MCAODC_24820 0.26 +0.8
1,678,654 - ycbJ MCAODC_24820 0.26 -2.1
1,678,678 - ycbJ MCAODC_24820 0.28 -0.2
1,678,764 + ycbJ MCAODC_24820 0.38 -2.2
1,678,764 + ycbJ MCAODC_24820 0.38 -0.3
1,678,765 - ycbJ MCAODC_24820 0.38 +1.8
1,678,805 + ycbJ MCAODC_24820 0.43 +1.4
1,678,830 - ycbJ MCAODC_24820 0.45 +0.1
1,678,854 + ycbJ MCAODC_24820 0.48 +0.4
1,678,904 + ycbJ MCAODC_24820 0.54 +0.6
1,678,904 + ycbJ MCAODC_24820 0.54 +0.8
1,678,905 - ycbJ MCAODC_24820 0.54 -0.7
1,679,092 + ycbJ MCAODC_24820 0.75 -0.7
1,679,105 + ycbJ MCAODC_24820 0.76 -0.1
1,679,105 + ycbJ MCAODC_24820 0.76 +0.9
1,679,105 + ycbJ MCAODC_24820 0.76 +0.1
1,679,105 + ycbJ MCAODC_24820 0.76 +0.6
1,679,171 + ycbJ MCAODC_24820 0.83 +0.3
1,679,174 + ycbJ MCAODC_24820 0.84 +0.2
1,679,218 + ycbJ MCAODC_24820 0.89 +1.4
1,679,286 + +0.4
1,679,286 + +1.3
1,679,366 + -1.0
1,679,366 + -0.1
1,679,367 - +0.8
1,679,428 + +0.4
1,679,428 + +0.2
1,679,428 + +1.4
1,679,429 - +1.9
1,679,473 + +1.1

Or see this region's nucleotide sequence