Strain Fitness in Escherichia coli ECRC101 around MCAODC_24805

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmukB and mukE overlap by 1 nucleotidesmukE and mukF overlap by 20 nucleotidesmukF and cmoM overlap by 4 nucleotidescmoM and elyC are separated by 135 nucleotides MCAODC_24795: mukB - chromosome partition protein MukB, at 1,670,284 to 1,674,744 mukB MCAODC_24800: mukE - chromosome partition protein MukE, at 1,674,744 to 1,675,448 mukE MCAODC_24805: mukF - chromosome partition protein MukF, at 1,675,429 to 1,676,751 mukF MCAODC_24810: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 1,676,748 to 1,677,533 cmoM MCAODC_24815: elyC - envelope biogenesis factor ElyC, at 1,677,669 to 1,678,448 elyC Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1676.793 kb on - strandat 1676.793 kb on - strandat 1676.793 kb on - strandat 1676.795 kb on - strandat 1676.808 kb on - strandat 1676.811 kb on - strandat 1676.811 kb on - strandat 1676.811 kb on - strandat 1676.813 kb on - strandat 1676.813 kb on - strandat 1676.813 kb on - strandat 1676.813 kb on - strandat 1676.813 kb on - strandat 1676.842 kb on - strand, within cmoMat 1676.842 kb on - strand, within cmoMat 1676.842 kb on - strand, within cmoMat 1676.851 kb on - strand, within cmoMat 1676.851 kb on - strand, within cmoMat 1676.861 kb on - strand, within cmoMat 1676.894 kb on - strand, within cmoMat 1676.922 kb on - strand, within cmoMat 1676.928 kb on - strand, within cmoMat 1676.960 kb on - strand, within cmoMat 1676.960 kb on - strand, within cmoMat 1676.960 kb on - strand, within cmoMat 1677.060 kb on - strand, within cmoMat 1677.060 kb on - strand, within cmoMat 1677.060 kb on - strand, within cmoMat 1677.060 kb on - strand, within cmoMat 1677.243 kb on - strand, within cmoMat 1677.243 kb on - strand, within cmoMat 1677.322 kb on - strand, within cmoMat 1677.482 kb on - strandat 1677.482 kb on - strandat 1677.489 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.619 kb on - strandat 1677.621 kb on + strandat 1677.621 kb on + strandat 1677.622 kb on - strandat 1677.622 kb on - strandat 1677.622 kb on - strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.641 kb on + strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.642 kb on - strandat 1677.643 kb on + strandat 1677.643 kb on + strandat 1677.643 kb on + strandat 1677.644 kb on - strandat 1677.644 kb on - strandat 1677.677 kb on + strandat 1677.678 kb on - strandat 1677.678 kb on - strandat 1677.701 kb on + strandat 1677.730 kb on + strandat 1677.730 kb on + strandat 1677.731 kb on - strandat 1677.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,676,793 - -0.1
1,676,793 - +1.3
1,676,793 - +1.6
1,676,795 - -0.9
1,676,808 - +1.2
1,676,811 - -0.2
1,676,811 - -1.3
1,676,811 - -0.8
1,676,813 - -0.6
1,676,813 - -0.2
1,676,813 - +0.2
1,676,813 - +0.6
1,676,813 - +1.3
1,676,842 - cmoM MCAODC_24810 0.12 +0.5
1,676,842 - cmoM MCAODC_24810 0.12 +2.4
1,676,842 - cmoM MCAODC_24810 0.12 -2.2
1,676,851 - cmoM MCAODC_24810 0.13 +0.6
1,676,851 - cmoM MCAODC_24810 0.13 +0.0
1,676,861 - cmoM MCAODC_24810 0.14 -1.0
1,676,894 - cmoM MCAODC_24810 0.19 -0.6
1,676,922 - cmoM MCAODC_24810 0.22 -0.5
1,676,928 - cmoM MCAODC_24810 0.23 +1.9
1,676,960 - cmoM MCAODC_24810 0.27 +0.9
1,676,960 - cmoM MCAODC_24810 0.27 -0.5
1,676,960 - cmoM MCAODC_24810 0.27 -0.2
1,677,060 - cmoM MCAODC_24810 0.40 -0.5
1,677,060 - cmoM MCAODC_24810 0.40 -0.2
1,677,060 - cmoM MCAODC_24810 0.40 +0.2
1,677,060 - cmoM MCAODC_24810 0.40 +0.8
1,677,243 - cmoM MCAODC_24810 0.63 +1.2
1,677,243 - cmoM MCAODC_24810 0.63 -1.1
1,677,322 - cmoM MCAODC_24810 0.73 -0.8
1,677,482 - -1.1
1,677,482 - -0.9
1,677,489 - +0.4
1,677,619 - -1.0
1,677,619 - -0.9
1,677,619 - -0.5
1,677,619 - +0.1
1,677,621 + -0.8
1,677,621 + +1.4
1,677,622 - -1.6
1,677,622 - +0.1
1,677,622 - +0.5
1,677,641 + +0.4
1,677,641 + -0.5
1,677,641 + -0.9
1,677,641 + -0.4
1,677,642 - -0.2
1,677,642 - -0.3
1,677,642 - -0.2
1,677,642 - -1.1
1,677,642 - +1.2
1,677,642 - +1.1
1,677,643 + +0.2
1,677,643 + -1.9
1,677,643 + +1.7
1,677,644 - +1.0
1,677,644 - +0.2
1,677,677 + -0.5
1,677,678 - +2.8
1,677,678 - +0.0
1,677,701 + +1.3
1,677,730 + +0.7
1,677,730 + -0.7
1,677,731 - -0.0
1,677,731 - -0.6

Or see this region's nucleotide sequence