Strain Fitness in Escherichia coli ECRC101 around MCAODC_23910

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteAL and MCAODC_23910 are separated by 97 nucleotidesMCAODC_23910 and MCAODC_23915 overlap by 4 nucleotides MCAODC_23905: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 1,504,210 to 1,505,820 eAL MCAODC_23910: MCAODC_23910 - GGDEF domain-containing protein, at 1,505,918 to 1,506,334 _23910 MCAODC_23915: MCAODC_23915 - Putative diguanylate cyclase, at 1,506,331 to 1,507,275 _23915 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -1 0 1 2 3at 1505.305 kb on + strand, within eALat 1505.616 kb on + strand, within eALat 1505.690 kb on - strandat 1505.772 kb on - strandat 1505.797 kb on - strandat 1505.988 kb on + strand, within MCAODC_23910at 1506.086 kb on - strand, within MCAODC_23910at 1506.231 kb on - strand, within MCAODC_23910at 1506.464 kb on - strand, within MCAODC_23915at 1507.241 kb on - strandat 1507.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,505,305 + eAL MCAODC_23905 0.68 -1.0
1,505,616 + eAL MCAODC_23905 0.87 -0.2
1,505,690 - -1.5
1,505,772 - -0.2
1,505,797 - +1.5
1,505,988 + MCAODC_23910 0.17 -0.8
1,506,086 - MCAODC_23910 0.40 +1.1
1,506,231 - MCAODC_23910 0.75 +0.6
1,506,464 - MCAODC_23915 0.14 +3.0
1,507,241 - -0.1
1,507,328 - -0.0

Or see this region's nucleotide sequence