Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asmA and dcd are separated by 21 nucleotides dcd and udk are separated by 91 nucleotides udk and MCAODC_20675 are separated by 317 nucleotides MCAODC_20675 and mASE1 overlap by 23 nucleotides
MCAODC_20660: asmA - outer membrane assembly protein AsmA, at 943,496 to 945,349
asmA
MCAODC_20665: dcd - dCTP deaminase, at 945,371 to 945,952
dcd
MCAODC_20670: udk - uridine kinase, at 946,044 to 946,685
udk
MCAODC_20675: MCAODC_20675 - Putative diguanylate cyclase YegE, at 947,003 to 947,536
_20675
MCAODC_20680: mASE1 - diguanylate cyclase, at 947,514 to 950,321
mASE1
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.167 kb on - strand at 945.167 kb on - strand at 945.248 kb on - strand at 945.248 kb on - strand at 945.248 kb on - strand at 945.250 kb on - strand at 945.372 kb on + strand at 945.373 kb on - strand at 945.849 kb on - strand, within dcd at 945.932 kb on - strand at 946.007 kb on - strand at 946.015 kb on - strand at 946.078 kb on - strand at 946.078 kb on - strand at 946.290 kb on - strand, within udk at 946.290 kb on - strand, within udk at 946.290 kb on - strand, within udk at 946.386 kb on - strand, within udk at 946.396 kb on + strand, within udk at 946.396 kb on + strand, within udk at 946.396 kb on + strand, within udk at 946.396 kb on + strand, within udk at 946.396 kb on + strand, within udk at 946.397 kb on - strand, within udk at 946.397 kb on - strand, within udk at 946.397 kb on - strand, within udk at 946.397 kb on - strand, within udk at 946.397 kb on - strand, within udk at 946.402 kb on + strand, within udk at 946.402 kb on + strand, within udk at 946.489 kb on + strand, within udk at 946.489 kb on + strand, within udk at 946.490 kb on - strand, within udk at 946.490 kb on - strand, within udk at 946.558 kb on - strand, within udk at 946.591 kb on - strand, within udk at 946.686 kb on - strand at 946.686 kb on - strand at 946.687 kb on + strand at 946.687 kb on + strand at 946.687 kb on + strand at 946.688 kb on - strand at 946.692 kb on - strand at 946.751 kb on - strand at 946.839 kb on - strand at 946.839 kb on - strand at 946.855 kb on + strand at 946.874 kb on + strand at 946.875 kb on - strand at 946.901 kb on + strand at 946.901 kb on + strand at 946.911 kb on + strand at 946.929 kb on - strand at 946.946 kb on + strand at 946.949 kb on + strand at 947.026 kb on - strand at 947.026 kb on - strand at 947.026 kb on - strand at 947.026 kb on - strand at 947.028 kb on + strand at 947.028 kb on + strand at 947.029 kb on - strand at 947.029 kb on - strand at 947.067 kb on + strand, within MCAODC_20675 at 947.073 kb on + strand, within MCAODC_20675 at 947.073 kb on + strand, within MCAODC_20675 at 947.175 kb on - strand, within MCAODC_20675 at 947.293 kb on + strand, within MCAODC_20675 at 947.293 kb on + strand, within MCAODC_20675 at 947.329 kb on + strand, within MCAODC_20675 at 947.345 kb on + strand, within MCAODC_20675 at 947.345 kb on + strand, within MCAODC_20675 at 947.345 kb on + strand, within MCAODC_20675 at 947.346 kb on - strand, within MCAODC_20675 at 947.346 kb on - strand, within MCAODC_20675 at 947.348 kb on - strand, within MCAODC_20675 at 947.482 kb on + strand, within MCAODC_20675 at 947.634 kb on + strand at 947.635 kb on - strand at 947.635 kb on - strand at 947.635 kb on - strand at 947.660 kb on + strand at 947.661 kb on - strand at 947.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 945,167 - -1.1 945,167 - +0.8 945,248 - +0.3 945,248 - +1.1 945,248 - +0.8 945,250 - +0.3 945,372 + +0.1 945,373 - +0.3 945,849 - dcd MCAODC_20665 0.82 +1.1 945,932 - +2.1 946,007 - +0.8 946,015 - -0.9 946,078 - +0.5 946,078 - +0.2 946,290 - udk MCAODC_20670 0.38 +1.0 946,290 - udk MCAODC_20670 0.38 +1.5 946,290 - udk MCAODC_20670 0.38 +0.7 946,386 - udk MCAODC_20670 0.53 +0.0 946,396 + udk MCAODC_20670 0.55 +1.0 946,396 + udk MCAODC_20670 0.55 -0.7 946,396 + udk MCAODC_20670 0.55 +2.4 946,396 + udk MCAODC_20670 0.55 -0.1 946,396 + udk MCAODC_20670 0.55 -0.5 946,397 - udk MCAODC_20670 0.55 -1.8 946,397 - udk MCAODC_20670 0.55 -0.4 946,397 - udk MCAODC_20670 0.55 -0.1 946,397 - udk MCAODC_20670 0.55 -0.0 946,397 - udk MCAODC_20670 0.55 -1.2 946,402 + udk MCAODC_20670 0.56 +0.1 946,402 + udk MCAODC_20670 0.56 -2.0 946,489 + udk MCAODC_20670 0.69 -0.1 946,489 + udk MCAODC_20670 0.69 +0.4 946,490 - udk MCAODC_20670 0.69 -0.2 946,490 - udk MCAODC_20670 0.69 -1.1 946,558 - udk MCAODC_20670 0.80 +0.6 946,591 - udk MCAODC_20670 0.85 +1.5 946,686 - -0.9 946,686 - +0.3 946,687 + +1.1 946,687 + -0.8 946,687 + -1.8 946,688 - +0.1 946,692 - -0.7 946,751 - +0.5 946,839 - -0.6 946,839 - +0.2 946,855 + -1.1 946,874 + +0.8 946,875 - +0.4 946,901 + -3.3 946,901 + +0.0 946,911 + +1.7 946,929 - +1.3 946,946 + -1.6 946,949 + -0.9 947,026 - -0.9 947,026 - -1.2 947,026 - +0.7 947,026 - +0.7 947,028 + +0.8 947,028 + +0.1 947,029 - +0.1 947,029 - -1.0 947,067 + MCAODC_20675 0.12 +0.6 947,073 + MCAODC_20675 0.13 +1.2 947,073 + MCAODC_20675 0.13 +0.0 947,175 - MCAODC_20675 0.32 +0.2 947,293 + MCAODC_20675 0.54 -0.4 947,293 + MCAODC_20675 0.54 -0.1 947,329 + MCAODC_20675 0.61 -1.4 947,345 + MCAODC_20675 0.64 +0.4 947,345 + MCAODC_20675 0.64 +0.4 947,345 + MCAODC_20675 0.64 +0.3 947,346 - MCAODC_20675 0.64 +2.9 947,346 - MCAODC_20675 0.64 +0.5 947,348 - MCAODC_20675 0.65 -0.2 947,482 + MCAODC_20675 0.90 -0.3 947,634 + +0.0 947,635 - -0.0 947,635 - -0.3 947,635 - -1.5 947,660 + +0.3 947,661 - +3.7 947,661 - -0.2
Or see this region's nucleotide sequence