Strain Fitness in Escherichia coli ECRC101 around MCAODC_20535

Experiment: WM_EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntwcaA and galF are separated by 318 nucleotidesgalF and MCAODC_20540 are separated by 242 nucleotides MCAODC_20530: wcaA - glycosyl transferase, at 914,382 to 915,164 wcaA MCAODC_20535: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 915,483 to 916,376 galF MCAODC_20540: MCAODC_20540 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 916,619 to 917,614 _20540 Position (kb) 915 916 917Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 914.504 kb on - strand, within wcaAat 914.717 kb on - strand, within wcaAat 915.111 kb on - strandat 915.301 kb on - strandat 915.309 kb on - strandat 915.377 kb on - strandat 915.386 kb on - strandat 915.551 kb on - strandat 915.596 kb on - strand, within galFat 915.696 kb on - strand, within galFat 915.944 kb on - strand, within galFat 916.033 kb on - strand, within galFat 916.079 kb on + strand, within galFat 916.104 kb on - strand, within galFat 916.123 kb on - strand, within galFat 916.123 kb on - strand, within galFat 916.166 kb on - strand, within galFat 916.166 kb on - strand, within galFat 916.262 kb on - strand, within galFat 916.262 kb on - strand, within galFat 916.329 kb on - strandat 916.329 kb on - strandat 916.445 kb on - strandat 916.447 kb on - strandat 916.447 kb on - strandat 916.449 kb on - strandat 916.449 kb on - strandat 916.497 kb on - strandat 916.544 kb on - strandat 916.621 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.871 kb on - strand, within MCAODC_20540at 916.871 kb on - strand, within MCAODC_20540at 916.871 kb on - strand, within MCAODC_20540at 916.940 kb on - strand, within MCAODC_20540at 916.948 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.954 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.032 kb on + strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.034 kb on + strand, within MCAODC_20540at 917.035 kb on - strand, within MCAODC_20540at 917.038 kb on + strand, within MCAODC_20540at 917.039 kb on - strand, within MCAODC_20540at 917.059 kb on + strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.092 kb on + strand, within MCAODC_20540at 917.092 kb on + strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.125 kb on + strand, within MCAODC_20540at 917.143 kb on + strand, within MCAODC_20540at 917.144 kb on - strand, within MCAODC_20540at 917.147 kb on + strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.278 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.373 kb on + strand, within MCAODC_20540at 917.373 kb on + strand, within MCAODC_20540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
remove
914,504 - wcaA MCAODC_20530 0.16 -1.2
914,717 - wcaA MCAODC_20530 0.43 -1.6
915,111 - +0.6
915,301 - -2.2
915,309 - -0.2
915,377 - +0.2
915,386 - +2.1
915,551 - -1.7
915,596 - galF MCAODC_20535 0.13 -0.7
915,696 - galF MCAODC_20535 0.24 -2.2
915,944 - galF MCAODC_20535 0.52 -0.3
916,033 - galF MCAODC_20535 0.62 +0.4
916,079 + galF MCAODC_20535 0.67 -2.9
916,104 - galF MCAODC_20535 0.69 -2.2
916,123 - galF MCAODC_20535 0.72 -0.4
916,123 - galF MCAODC_20535 0.72 -2.9
916,166 - galF MCAODC_20535 0.76 -0.4
916,166 - galF MCAODC_20535 0.76 -1.6
916,262 - galF MCAODC_20535 0.87 -3.2
916,262 - galF MCAODC_20535 0.87 -0.9
916,329 - -2.8
916,329 - -1.7
916,445 - +1.7
916,447 - -1.0
916,447 - -0.8
916,449 - +0.3
916,449 - +0.3
916,497 - -0.7
916,544 - -2.7
916,621 - +0.7
916,703 - -2.0
916,703 - -0.3
916,703 - -4.7
916,703 - -2.5
916,703 - -3.0
916,703 - -2.3
916,871 - MCAODC_20540 0.25 -3.9
916,871 - MCAODC_20540 0.25 -2.7
916,871 - MCAODC_20540 0.25 +1.1
916,940 - MCAODC_20540 0.32 -2.9
916,948 - MCAODC_20540 0.33 -1.6
916,952 - MCAODC_20540 0.33 -2.0
916,952 - MCAODC_20540 0.33 -5.4
916,952 - MCAODC_20540 0.33 -2.7
916,952 - MCAODC_20540 0.33 -1.9
916,954 - MCAODC_20540 0.34 -2.3
917,020 - MCAODC_20540 0.40 -2.4
917,020 - MCAODC_20540 0.40 -2.6
917,020 - MCAODC_20540 0.40 -1.1
917,020 - MCAODC_20540 0.40 -2.2
917,020 - MCAODC_20540 0.40 -4.3
917,032 + MCAODC_20540 0.41 -2.9
917,033 - MCAODC_20540 0.42 -5.2
917,033 - MCAODC_20540 0.42 -2.7
917,033 - MCAODC_20540 0.42 -2.0
917,033 - MCAODC_20540 0.42 -2.2
917,034 + MCAODC_20540 0.42 -0.5
917,035 - MCAODC_20540 0.42 -3.4
917,038 + MCAODC_20540 0.42 -2.1
917,039 - MCAODC_20540 0.42 -1.7
917,059 + MCAODC_20540 0.44 -0.9
917,060 - MCAODC_20540 0.44 -2.9
917,060 - MCAODC_20540 0.44 -3.7
917,060 - MCAODC_20540 0.44 -1.8
917,092 + MCAODC_20540 0.47 -0.2
917,092 + MCAODC_20540 0.47 -3.0
917,093 - MCAODC_20540 0.48 -3.0
917,093 - MCAODC_20540 0.48 -2.4
917,093 - MCAODC_20540 0.48 -0.4
917,093 - MCAODC_20540 0.48 -1.8
917,125 + MCAODC_20540 0.51 +0.4
917,143 + MCAODC_20540 0.53 +0.0
917,144 - MCAODC_20540 0.53 -2.1
917,147 + MCAODC_20540 0.53 +2.1
917,148 - MCAODC_20540 0.53 -1.9
917,148 - MCAODC_20540 0.53 -2.8
917,148 - MCAODC_20540 0.53 -0.7
917,174 - MCAODC_20540 0.56 -4.1
917,174 - MCAODC_20540 0.56 -1.7
917,174 - MCAODC_20540 0.56 -3.0
917,174 - MCAODC_20540 0.56 -4.2
917,174 - MCAODC_20540 0.56 -2.8
917,174 - MCAODC_20540 0.56 -1.6
917,278 - MCAODC_20540 0.66 -0.1
917,371 - MCAODC_20540 0.76 -1.7
917,371 - MCAODC_20540 0.76 +1.3
917,371 - MCAODC_20540 0.76 -1.3
917,373 + MCAODC_20540 0.76 +0.6
917,373 + MCAODC_20540 0.76 -2.0

Or see this region's nucleotide sequence