Strain Fitness in Escherichia coli ECRC101 around MCAODC_19800

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcm and yedJ are separated by 66 nucleotidesyedJ and MCAODC_19810 are separated by 970 nucleotides MCAODC_19795: dcm - DNA-cytosine methyltransferase, at 784,654 to 786,072 dcm MCAODC_19800: yedJ - phosphohydrolase, at 786,139 to 786,834 yedJ MCAODC_19810: MCAODC_19810 - Putative outer membrane protein, at 787,805 to 788,449 _19810 Position (kb) 786 787Strain fitness (log2 ratio) -1 0 1 2 3at 785.208 kb on + strand, within dcmat 785.368 kb on - strand, within dcmat 785.592 kb on + strand, within dcmat 785.652 kb on + strand, within dcmat 785.885 kb on - strand, within dcmat 786.113 kb on - strandat 786.113 kb on - strandat 786.113 kb on - strandat 786.116 kb on + strandat 786.163 kb on + strandat 786.164 kb on - strandat 786.306 kb on + strand, within yedJat 786.657 kb on + strand, within yedJat 786.680 kb on - strand, within yedJat 786.693 kb on + strand, within yedJat 786.826 kb on + strandat 786.826 kb on + strandat 786.826 kb on + strandat 786.826 kb on + strandat 786.826 kb on + strandat 786.827 kb on - strandat 786.827 kb on - strandat 786.827 kb on - strandat 786.866 kb on - strandat 786.891 kb on + strandat 786.892 kb on - strandat 787.061 kb on - strandat 787.099 kb on + strandat 787.203 kb on + strandat 787.204 kb on - strandat 787.204 kb on - strandat 787.206 kb on + strandat 787.207 kb on - strandat 787.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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785,208 + dcm MCAODC_19795 0.39 +2.7
785,368 - dcm MCAODC_19795 0.50 -0.5
785,592 + dcm MCAODC_19795 0.66 +2.1
785,652 + dcm MCAODC_19795 0.70 +1.1
785,885 - dcm MCAODC_19795 0.87 +2.7
786,113 - -0.0
786,113 - +2.1
786,113 - +0.9
786,116 + -0.9
786,163 + +0.5
786,164 - +1.4
786,306 + yedJ MCAODC_19800 0.24 -1.0
786,657 + yedJ MCAODC_19800 0.74 +3.3
786,680 - yedJ MCAODC_19800 0.78 +0.4
786,693 + yedJ MCAODC_19800 0.80 +0.9
786,826 + +1.7
786,826 + -0.7
786,826 + +0.5
786,826 + -1.6
786,826 + +0.1
786,827 - +0.9
786,827 - -0.3
786,827 - -1.5
786,866 - -0.4
786,891 + -0.1
786,892 - +0.3
787,061 - -0.2
787,099 + +3.0
787,203 + -0.2
787,204 - -0.5
787,204 - +0.6
787,206 + +0.7
787,207 - +0.3
787,762 + +0.3

Or see this region's nucleotide sequence