Strain Fitness in Escherichia coli ECRC101 around MCAODC_18635

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_18625 and MCAODC_18630 overlap by 26 nucleotidesMCAODC_18630 and ydjF are separated by 117 nucleotidesydjF and ydjG are separated by 136 nucleotides MCAODC_18625: MCAODC_18625 - IS3 family transposase, at 583,831 to 584,718 _18625 MCAODC_18630: MCAODC_18630 - Insertion sequence 2 OrfA protein, at 584,693 to 584,863 _18630 MCAODC_18635: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 584,981 to 585,739 ydjF MCAODC_18640: ydjG - NADH-dependent methylglyoxal reductase, at 585,876 to 586,856 ydjG Position (kb) 584 585 586Strain fitness (log2 ratio) -1 0 1 2at 584.777 kb on - strand, within MCAODC_18630at 585.058 kb on - strand, within ydjFat 585.208 kb on + strand, within ydjFat 585.221 kb on - strand, within ydjFat 585.221 kb on - strand, within ydjFat 585.231 kb on - strand, within ydjFat 585.395 kb on - strand, within ydjFat 585.494 kb on - strand, within ydjFat 585.510 kb on + strand, within ydjFat 585.532 kb on - strand, within ydjFat 585.583 kb on - strand, within ydjFat 585.583 kb on - strand, within ydjFat 585.710 kb on - strandat 585.744 kb on - strandat 585.873 kb on + strandat 585.878 kb on - strandat 586.021 kb on - strand, within ydjGat 586.091 kb on + strand, within ydjGat 586.299 kb on - strand, within ydjGat 586.350 kb on - strand, within ydjGat 586.387 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.541 kb on - strand, within ydjGat 586.615 kb on - strand, within ydjGat 586.615 kb on - strand, within ydjGat 586.658 kb on + strand, within ydjGat 586.668 kb on - strand, within ydjGat 586.679 kb on + strand, within ydjGat 586.680 kb on - strand, within ydjGat 586.680 kb on - strand, within ydjGat 586.682 kb on - strand, within ydjGat 586.695 kb on - strand, within ydjG

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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584,777 - MCAODC_18630 0.49 +0.9
585,058 - ydjF MCAODC_18635 0.10 +1.7
585,208 + ydjF MCAODC_18635 0.30 +1.6
585,221 - ydjF MCAODC_18635 0.32 +1.6
585,221 - ydjF MCAODC_18635 0.32 +1.0
585,231 - ydjF MCAODC_18635 0.33 -0.7
585,395 - ydjF MCAODC_18635 0.55 +0.0
585,494 - ydjF MCAODC_18635 0.68 +2.0
585,510 + ydjF MCAODC_18635 0.70 +0.6
585,532 - ydjF MCAODC_18635 0.73 -0.3
585,583 - ydjF MCAODC_18635 0.79 -1.0
585,583 - ydjF MCAODC_18635 0.79 +1.7
585,710 - -0.4
585,744 - -0.3
585,873 + +2.7
585,878 - -0.3
586,021 - ydjG MCAODC_18640 0.15 +0.1
586,091 + ydjG MCAODC_18640 0.22 +1.4
586,299 - ydjG MCAODC_18640 0.43 +2.0
586,350 - ydjG MCAODC_18640 0.48 +1.7
586,387 - ydjG MCAODC_18640 0.52 -0.3
586,460 - ydjG MCAODC_18640 0.60 +1.3
586,460 - ydjG MCAODC_18640 0.60 +0.4
586,460 - ydjG MCAODC_18640 0.60 -0.7
586,460 - ydjG MCAODC_18640 0.60 -1.7
586,460 - ydjG MCAODC_18640 0.60 +0.1
586,460 - ydjG MCAODC_18640 0.60 -0.1
586,460 - ydjG MCAODC_18640 0.60 +1.5
586,460 - ydjG MCAODC_18640 0.60 -0.3
586,541 - ydjG MCAODC_18640 0.68 +2.0
586,615 - ydjG MCAODC_18640 0.75 +0.1
586,615 - ydjG MCAODC_18640 0.75 -1.2
586,658 + ydjG MCAODC_18640 0.80 -0.2
586,668 - ydjG MCAODC_18640 0.81 +1.1
586,679 + ydjG MCAODC_18640 0.82 -1.0
586,680 - ydjG MCAODC_18640 0.82 +0.2
586,680 - ydjG MCAODC_18640 0.82 +1.4
586,682 - ydjG MCAODC_18640 0.82 +1.4
586,695 - ydjG MCAODC_18640 0.83 +1.1

Or see this region's nucleotide sequence