Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiY and pfkB are separated by 286 nucleotides pfkB and ydiZ are separated by 100 nucleotides ydiZ and yniA are separated by 105 nucleotides
MCAODC_18370: ydiY - Uncharacterized protein YdiY, at 534,307 to 535,065
ydiY
MCAODC_18375: pfkB - 6-phosphofructokinase II, at 535,352 to 536,281
pfkB
MCAODC_18380: ydiZ - Uncharacterized protein YdiZ, at 536,382 to 536,672
ydiZ
MCAODC_18385: yniA - putative ketoamine kinase YniA, at 536,778 to 537,638
yniA
Position (kb) 535
536
537 Strain fitness (log2 ratio) -1
0
1
2 at 534.396 kb on - strand, within ydiY at 534.396 kb on - strand, within ydiY at 534.437 kb on - strand, within ydiY at 534.528 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.693 kb on - strand, within ydiY at 534.724 kb on + strand, within ydiY at 534.725 kb on - strand, within ydiY at 534.735 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.914 kb on + strand, within ydiY at 535.182 kb on - strand at 535.211 kb on + strand at 535.286 kb on + strand at 535.338 kb on + strand at 535.360 kb on + strand at 535.360 kb on + strand at 535.361 kb on - strand at 535.361 kb on - strand at 535.364 kb on + strand at 535.366 kb on + strand at 535.366 kb on + strand at 535.599 kb on + strand, within pfkB at 535.599 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.636 kb on - strand, within pfkB at 535.672 kb on + strand, within pfkB at 535.758 kb on + strand, within pfkB at 535.758 kb on + strand, within pfkB at 535.866 kb on + strand, within pfkB at 536.120 kb on - strand, within pfkB at 536.120 kb on - strand, within pfkB at 536.345 kb on + strand at 536.346 kb on - strand at 536.381 kb on + strand at 536.381 kb on + strand at 536.406 kb on + strand at 536.435 kb on + strand, within ydiZ at 536.466 kb on + strand, within ydiZ at 536.516 kb on + strand, within ydiZ at 536.534 kb on + strand, within ydiZ at 536.534 kb on + strand, within ydiZ at 536.549 kb on + strand, within ydiZ at 536.549 kb on + strand, within ydiZ at 536.549 kb on + strand, within ydiZ at 536.746 kb on + strand at 536.746 kb on + strand at 536.815 kb on + strand at 536.981 kb on + strand, within yniA at 537.116 kb on - strand, within yniA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 534,396 - ydiY MCAODC_18370 0.12 -0.9 534,396 - ydiY MCAODC_18370 0.12 +2.5 534,437 - ydiY MCAODC_18370 0.17 -0.4 534,528 - ydiY MCAODC_18370 0.29 +0.0 534,579 - ydiY MCAODC_18370 0.36 -1.1 534,579 - ydiY MCAODC_18370 0.36 +0.1 534,691 - ydiY MCAODC_18370 0.51 +0.2 534,691 - ydiY MCAODC_18370 0.51 +1.1 534,691 - ydiY MCAODC_18370 0.51 +0.1 534,693 - ydiY MCAODC_18370 0.51 +0.1 534,724 + ydiY MCAODC_18370 0.55 -0.7 534,725 - ydiY MCAODC_18370 0.55 +0.7 534,735 - ydiY MCAODC_18370 0.56 +0.9 534,799 - ydiY MCAODC_18370 0.65 +2.7 534,799 - ydiY MCAODC_18370 0.65 +1.1 534,914 + ydiY MCAODC_18370 0.80 +0.7 535,182 - -0.4 535,211 + +0.8 535,286 + +1.6 535,338 + +0.9 535,360 + +0.4 535,360 + +2.1 535,361 - -0.2 535,361 - -1.6 535,364 + -0.3 535,366 + -1.6 535,366 + +0.5 535,599 + pfkB MCAODC_18375 0.27 +0.7 535,599 + pfkB MCAODC_18375 0.27 +1.3 535,635 + pfkB MCAODC_18375 0.30 +0.6 535,635 + pfkB MCAODC_18375 0.30 -0.5 535,635 + pfkB MCAODC_18375 0.30 +1.0 535,635 + pfkB MCAODC_18375 0.30 +0.9 535,635 + pfkB MCAODC_18375 0.30 -0.5 535,636 - pfkB MCAODC_18375 0.31 +0.2 535,672 + pfkB MCAODC_18375 0.34 -0.4 535,758 + pfkB MCAODC_18375 0.44 +0.6 535,758 + pfkB MCAODC_18375 0.44 +1.1 535,866 + pfkB MCAODC_18375 0.55 -0.5 536,120 - pfkB MCAODC_18375 0.83 +0.6 536,120 - pfkB MCAODC_18375 0.83 -0.1 536,345 + -0.2 536,346 - +0.4 536,381 + +0.9 536,381 + +0.1 536,406 + +0.4 536,435 + ydiZ MCAODC_18380 0.18 +1.0 536,466 + ydiZ MCAODC_18380 0.29 -0.2 536,516 + ydiZ MCAODC_18380 0.46 -1.0 536,534 + ydiZ MCAODC_18380 0.52 -0.1 536,534 + ydiZ MCAODC_18380 0.52 +0.1 536,549 + ydiZ MCAODC_18380 0.57 -0.9 536,549 + ydiZ MCAODC_18380 0.57 +1.1 536,549 + ydiZ MCAODC_18380 0.57 +0.5 536,746 + +1.4 536,746 + +1.3 536,815 + -0.5 536,981 + yniA MCAODC_18385 0.24 +2.1 537,116 - yniA MCAODC_18385 0.39 -0.0
Or see this region's nucleotide sequence