Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_18360 and yniD are separated by 174 nucleotides yniD and ydiY are separated by 52 nucleotides ydiY and pfkB are separated by 286 nucleotides
MCAODC_18360: MCAODC_18360 - ShET2 enterotoxin, N-terminal region, at 532,074 to 533,972
_18360
MCAODC_18365: yniD - Uncharacterized protein YniD, at 534,147 to 534,254
yniD
MCAODC_18370: ydiY - Uncharacterized protein YdiY, at 534,307 to 535,065
ydiY
MCAODC_18375: pfkB - 6-phosphofructokinase II, at 535,352 to 536,281
pfkB
Position (kb) 534
535
536 Strain fitness (log2 ratio) -1
0
1
2 at 533.921 kb on - strand at 534.047 kb on + strand at 534.071 kb on + strand at 534.131 kb on + strand at 534.226 kb on + strand, within yniD at 534.303 kb on - strand at 534.309 kb on - strand at 534.309 kb on - strand at 534.318 kb on - strand at 534.329 kb on - strand at 534.329 kb on - strand at 534.396 kb on - strand, within ydiY at 534.396 kb on - strand, within ydiY at 534.437 kb on - strand, within ydiY at 534.528 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.693 kb on - strand, within ydiY at 534.724 kb on + strand, within ydiY at 534.725 kb on - strand, within ydiY at 534.735 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.914 kb on + strand, within ydiY at 535.182 kb on - strand at 535.211 kb on + strand at 535.286 kb on + strand at 535.338 kb on + strand at 535.360 kb on + strand at 535.360 kb on + strand at 535.361 kb on - strand at 535.361 kb on - strand at 535.364 kb on + strand at 535.366 kb on + strand at 535.366 kb on + strand at 535.599 kb on + strand, within pfkB at 535.599 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.635 kb on + strand, within pfkB at 535.636 kb on - strand, within pfkB at 535.672 kb on + strand, within pfkB at 535.758 kb on + strand, within pfkB at 535.758 kb on + strand, within pfkB at 535.866 kb on + strand, within pfkB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 533,921 - +1.9 534,047 + -0.3 534,071 + +0.0 534,131 + +1.4 534,226 + yniD MCAODC_18365 0.73 +1.2 534,303 - +1.5 534,309 - -0.3 534,309 - +1.0 534,318 - -0.2 534,329 - -0.1 534,329 - +0.7 534,396 - ydiY MCAODC_18370 0.12 -0.9 534,396 - ydiY MCAODC_18370 0.12 +2.5 534,437 - ydiY MCAODC_18370 0.17 -0.4 534,528 - ydiY MCAODC_18370 0.29 +0.0 534,579 - ydiY MCAODC_18370 0.36 -1.1 534,579 - ydiY MCAODC_18370 0.36 +0.1 534,691 - ydiY MCAODC_18370 0.51 +0.2 534,691 - ydiY MCAODC_18370 0.51 +1.1 534,691 - ydiY MCAODC_18370 0.51 +0.1 534,693 - ydiY MCAODC_18370 0.51 +0.1 534,724 + ydiY MCAODC_18370 0.55 -0.7 534,725 - ydiY MCAODC_18370 0.55 +0.7 534,735 - ydiY MCAODC_18370 0.56 +0.9 534,799 - ydiY MCAODC_18370 0.65 +2.7 534,799 - ydiY MCAODC_18370 0.65 +1.1 534,914 + ydiY MCAODC_18370 0.80 +0.7 535,182 - -0.4 535,211 + +0.8 535,286 + +1.6 535,338 + +0.9 535,360 + +0.4 535,360 + +2.1 535,361 - -0.2 535,361 - -1.6 535,364 + -0.3 535,366 + -1.6 535,366 + +0.5 535,599 + pfkB MCAODC_18375 0.27 +0.7 535,599 + pfkB MCAODC_18375 0.27 +1.3 535,635 + pfkB MCAODC_18375 0.30 +0.6 535,635 + pfkB MCAODC_18375 0.30 -0.5 535,635 + pfkB MCAODC_18375 0.30 +1.0 535,635 + pfkB MCAODC_18375 0.30 +0.9 535,635 + pfkB MCAODC_18375 0.30 -0.5 535,636 - pfkB MCAODC_18375 0.31 +0.2 535,672 + pfkB MCAODC_18375 0.34 -0.4 535,758 + pfkB MCAODC_18375 0.44 +0.6 535,758 + pfkB MCAODC_18375 0.44 +1.1 535,866 + pfkB MCAODC_18375 0.55 -0.5
Or see this region's nucleotide sequence