Strain Fitness in Escherichia coli ECRC101 around MCAODC_18255

Experiment: WM_EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiS and ydiT overlap by 4 nucleotidesydiT and fadK are separated by 56 nucleotides MCAODC_18250: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 510,378 to 511,667 ydiS MCAODC_18255: ydiT - Ferredoxin-like protein YdiT, at 511,664 to 511,957 ydiT MCAODC_18260: fadK - medium-chain fatty-acid--CoA ligase, at 512,014 to 513,555 fadK Position (kb) 511 512Strain fitness (log2 ratio) -2 -1 0 1 2 3at 510.684 kb on + strand, within ydiSat 510.685 kb on - strand, within ydiSat 510.685 kb on - strand, within ydiSat 510.685 kb on - strand, within ydiSat 510.686 kb on + strand, within ydiSat 510.687 kb on - strand, within ydiSat 510.691 kb on + strand, within ydiSat 510.824 kb on + strand, within ydiSat 510.864 kb on - strand, within ydiSat 510.932 kb on + strand, within ydiSat 510.980 kb on + strand, within ydiSat 511.058 kb on + strand, within ydiSat 511.214 kb on + strand, within ydiSat 511.313 kb on + strand, within ydiSat 511.420 kb on - strand, within ydiSat 511.781 kb on - strand, within ydiTat 511.813 kb on + strand, within ydiTat 511.813 kb on + strand, within ydiTat 511.917 kb on - strand, within ydiTat 511.956 kb on - strandat 512.164 kb on + strandat 512.165 kb on - strandat 512.165 kb on - strandat 512.170 kb on + strand, within fadKat 512.170 kb on + strand, within fadKat 512.171 kb on - strand, within fadKat 512.171 kb on - strand, within fadKat 512.171 kb on - strand, within fadKat 512.173 kb on - strand, within fadKat 512.283 kb on + strand, within fadKat 512.284 kb on - strand, within fadKat 512.287 kb on + strand, within fadKat 512.287 kb on + strand, within fadKat 512.287 kb on + strand, within fadKat 512.322 kb on - strand, within fadKat 512.367 kb on + strand, within fadKat 512.371 kb on - strand, within fadKat 512.395 kb on - strand, within fadKat 512.432 kb on + strand, within fadKat 512.465 kb on + strand, within fadKat 512.466 kb on - strand, within fadKat 512.519 kb on + strand, within fadKat 512.643 kb on + strand, within fadKat 512.649 kb on + strand, within fadKat 512.650 kb on - strand, within fadKat 512.672 kb on - strand, within fadKat 512.710 kb on - strand, within fadKat 512.772 kb on - strand, within fadKat 512.895 kb on - strand, within fadK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
remove
510,684 + ydiS MCAODC_18250 0.24 +1.9
510,685 - ydiS MCAODC_18250 0.24 -0.8
510,685 - ydiS MCAODC_18250 0.24 +0.0
510,685 - ydiS MCAODC_18250 0.24 -0.8
510,686 + ydiS MCAODC_18250 0.24 -0.9
510,687 - ydiS MCAODC_18250 0.24 +1.2
510,691 + ydiS MCAODC_18250 0.24 +3.3
510,824 + ydiS MCAODC_18250 0.35 -0.1
510,864 - ydiS MCAODC_18250 0.38 -0.5
510,932 + ydiS MCAODC_18250 0.43 +3.0
510,980 + ydiS MCAODC_18250 0.47 +0.7
511,058 + ydiS MCAODC_18250 0.53 -0.3
511,214 + ydiS MCAODC_18250 0.65 -0.3
511,313 + ydiS MCAODC_18250 0.72 +0.9
511,420 - ydiS MCAODC_18250 0.81 +1.4
511,781 - ydiT MCAODC_18255 0.40 -0.7
511,813 + ydiT MCAODC_18255 0.51 -0.7
511,813 + ydiT MCAODC_18255 0.51 +2.1
511,917 - ydiT MCAODC_18255 0.86 +0.4
511,956 - -0.5
512,164 + +0.3
512,165 - -0.0
512,165 - -0.7
512,170 + fadK MCAODC_18260 0.10 -1.3
512,170 + fadK MCAODC_18260 0.10 +0.0
512,171 - fadK MCAODC_18260 0.10 +0.3
512,171 - fadK MCAODC_18260 0.10 +1.5
512,171 - fadK MCAODC_18260 0.10 -2.0
512,173 - fadK MCAODC_18260 0.10 +1.6
512,283 + fadK MCAODC_18260 0.17 +1.3
512,284 - fadK MCAODC_18260 0.18 +0.9
512,287 + fadK MCAODC_18260 0.18 +1.8
512,287 + fadK MCAODC_18260 0.18 +1.7
512,287 + fadK MCAODC_18260 0.18 -1.9
512,322 - fadK MCAODC_18260 0.20 +3.1
512,367 + fadK MCAODC_18260 0.23 +0.7
512,371 - fadK MCAODC_18260 0.23 +0.7
512,395 - fadK MCAODC_18260 0.25 -0.3
512,432 + fadK MCAODC_18260 0.27 +0.7
512,465 + fadK MCAODC_18260 0.29 +0.7
512,466 - fadK MCAODC_18260 0.29 +1.7
512,519 + fadK MCAODC_18260 0.33 -0.4
512,643 + fadK MCAODC_18260 0.41 +0.1
512,649 + fadK MCAODC_18260 0.41 +1.7
512,650 - fadK MCAODC_18260 0.41 +0.4
512,672 - fadK MCAODC_18260 0.43 -1.2
512,710 - fadK MCAODC_18260 0.45 +0.4
512,772 - fadK MCAODC_18260 0.49 -0.8
512,895 - fadK MCAODC_18260 0.57 +0.5

Or see this region's nucleotide sequence