Strain Fitness in Escherichia coli ECRC101 around MCAODC_18045

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcfa and ribE are separated by 39 nucleotidesribE and mdtK are separated by 214 nucleotides MCAODC_18040: cfa - cyclopropane fatty acyl phospholipid synthase, at 470,393 to 471,541 cfa MCAODC_18045: ribE - riboflavin synthase, at 471,581 to 472,222 ribE MCAODC_18050: mdtK - multidrug efflux MATE transporter MdtK, at 472,437 to 473,810 mdtK Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 470.942 kb on + strand, within cfaat 470.943 kb on - strand, within cfaat 470.953 kb on + strand, within cfaat 470.953 kb on + strand, within cfaat 470.953 kb on + strand, within cfaat 470.953 kb on + strand, within cfaat 470.954 kb on - strand, within cfaat 470.954 kb on - strand, within cfaat 470.965 kb on - strand, within cfaat 471.085 kb on + strand, within cfaat 471.133 kb on + strand, within cfaat 471.193 kb on + strand, within cfaat 471.238 kb on + strand, within cfaat 471.238 kb on + strand, within cfaat 471.239 kb on - strand, within cfaat 471.325 kb on + strand, within cfaat 471.341 kb on + strand, within cfaat 471.342 kb on - strand, within cfaat 471.346 kb on + strand, within cfaat 471.407 kb on + strand, within cfaat 471.433 kb on + strandat 471.433 kb on + strandat 471.433 kb on + strandat 471.437 kb on + strandat 471.438 kb on - strandat 471.552 kb on - strandat 471.639 kb on - strandat 472.246 kb on - strandat 472.246 kb on - strandat 472.287 kb on + strandat 472.345 kb on - strandat 472.349 kb on + strandat 472.349 kb on + strandat 472.411 kb on + strandat 472.414 kb on - strandat 472.414 kb on - strandat 472.417 kb on + strandat 472.424 kb on - strandat 472.447 kb on - strandat 472.448 kb on + strandat 472.471 kb on + strandat 472.593 kb on - strand, within mdtKat 472.660 kb on + strand, within mdtKat 472.962 kb on + strand, within mdtKat 472.962 kb on + strand, within mdtKat 472.962 kb on + strand, within mdtKat 472.962 kb on + strand, within mdtKat 472.963 kb on - strand, within mdtKat 472.963 kb on - strand, within mdtKat 472.963 kb on - strand, within mdtKat 473.037 kb on + strand, within mdtKat 473.037 kb on + strand, within mdtKat 473.067 kb on + strand, within mdtKat 473.067 kb on + strand, within mdtKat 473.221 kb on + strand, within mdtK

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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470,942 + cfa MCAODC_18040 0.48 +1.4
470,943 - cfa MCAODC_18040 0.48 -1.5
470,953 + cfa MCAODC_18040 0.49 +0.5
470,953 + cfa MCAODC_18040 0.49 +1.1
470,953 + cfa MCAODC_18040 0.49 -0.1
470,953 + cfa MCAODC_18040 0.49 -0.8
470,954 - cfa MCAODC_18040 0.49 -0.1
470,954 - cfa MCAODC_18040 0.49 +0.1
470,965 - cfa MCAODC_18040 0.50 +0.1
471,085 + cfa MCAODC_18040 0.60 +3.0
471,133 + cfa MCAODC_18040 0.64 +0.5
471,193 + cfa MCAODC_18040 0.70 +1.1
471,238 + cfa MCAODC_18040 0.74 -0.4
471,238 + cfa MCAODC_18040 0.74 +1.8
471,239 - cfa MCAODC_18040 0.74 +0.5
471,325 + cfa MCAODC_18040 0.81 +1.5
471,341 + cfa MCAODC_18040 0.83 +1.4
471,342 - cfa MCAODC_18040 0.83 -0.2
471,346 + cfa MCAODC_18040 0.83 +0.2
471,407 + cfa MCAODC_18040 0.88 +0.9
471,433 + +1.7
471,433 + +0.3
471,433 + -0.0
471,437 + -0.0
471,438 - +0.4
471,552 - -0.5
471,639 - -0.7
472,246 - +0.6
472,246 - -0.4
472,287 + +0.4
472,345 - +1.1
472,349 + -1.8
472,349 + +1.1
472,411 + +0.0
472,414 - +0.3
472,414 - +0.7
472,417 + +0.5
472,424 - -0.2
472,447 - +0.2
472,448 + -0.2
472,471 + +0.8
472,593 - mdtK MCAODC_18050 0.11 +1.0
472,660 + mdtK MCAODC_18050 0.16 +2.5
472,962 + mdtK MCAODC_18050 0.38 -1.4
472,962 + mdtK MCAODC_18050 0.38 +0.6
472,962 + mdtK MCAODC_18050 0.38 +2.1
472,962 + mdtK MCAODC_18050 0.38 +1.1
472,963 - mdtK MCAODC_18050 0.38 -0.7
472,963 - mdtK MCAODC_18050 0.38 +2.9
472,963 - mdtK MCAODC_18050 0.38 -0.0
473,037 + mdtK MCAODC_18050 0.44 -1.0
473,037 + mdtK MCAODC_18050 0.44 -1.0
473,067 + mdtK MCAODC_18050 0.46 -0.1
473,067 + mdtK MCAODC_18050 0.46 +1.0
473,221 + mdtK MCAODC_18050 0.57 +1.7

Or see this region's nucleotide sequence