Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgT and ydgK are separated by 85 nucleotides ydgK and rsxA are separated by 76 nucleotides rsxA and rsxB overlap by 1 nucleotides rsxB and rsxC overlap by 8 nucleotides
MCAODC_17845: ydgT - transcription modulator YdgT, at 433,849 to 434,064
ydgT
MCAODC_17850: ydgK - Inner membrane protein YdgK, at 434,150 to 434,590
ydgK
MCAODC_17855: rsxA - electron transport complex subunit RsxA, at 434,667 to 435,248
rsxA
MCAODC_17860: rsxB - electron transport complex subunit RsxB, at 435,248 to 435,826
rsxB
MCAODC_17865: rsxC - electron transport complex subunit RsxC, at 435,819 to 438,137
rsxC
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.763 kb on - strand at 433.804 kb on + strand at 433.828 kb on + strand at 433.832 kb on + strand at 433.864 kb on + strand at 433.868 kb on + strand at 433.915 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.927 kb on - strand, within ydgT at 433.962 kb on + strand, within ydgT at 433.963 kb on - strand, within ydgT at 433.966 kb on + strand, within ydgT at 433.966 kb on + strand, within ydgT at 434.054 kb on - strand at 434.083 kb on - strand at 434.094 kb on - strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.096 kb on - strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.150 kb on - strand at 434.227 kb on + strand, within ydgK at 434.250 kb on - strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.418 kb on - strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.420 kb on - strand, within ydgK at 434.434 kb on + strand, within ydgK at 434.490 kb on + strand, within ydgK at 434.588 kb on + strand at 434.597 kb on + strand at 434.598 kb on - strand at 434.603 kb on + strand at 434.701 kb on + strand at 434.964 kb on + strand, within rsxA at 434.993 kb on + strand, within rsxA at 435.187 kb on + strand, within rsxA at 435.203 kb on + strand at 435.204 kb on - strand at 435.256 kb on + strand at 435.446 kb on - strand, within rsxB at 435.592 kb on + strand, within rsxB at 435.592 kb on + strand, within rsxB at 435.610 kb on + strand, within rsxB at 435.616 kb on + strand, within rsxB at 435.616 kb on + strand, within rsxB at 435.702 kb on + strand, within rsxB at 436.079 kb on + strand, within rsxC at 436.145 kb on + strand, within rsxC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 433,763 - -0.4 433,804 + +1.3 433,828 + -0.2 433,832 + +1.1 433,864 + +0.4 433,868 + -0.7 433,915 + ydgT MCAODC_17845 0.31 +0.3 433,926 + ydgT MCAODC_17845 0.36 +0.3 433,926 + ydgT MCAODC_17845 0.36 -0.2 433,927 - ydgT MCAODC_17845 0.36 -0.4 433,962 + ydgT MCAODC_17845 0.52 +0.7 433,963 - ydgT MCAODC_17845 0.53 +0.9 433,966 + ydgT MCAODC_17845 0.54 +1.8 433,966 + ydgT MCAODC_17845 0.54 +0.2 434,054 - -0.3 434,083 - +0.1 434,094 - +2.1 434,095 + +0.1 434,095 + +1.1 434,095 + +0.5 434,095 + -0.5 434,095 + -0.5 434,096 - +0.2 434,149 + -0.5 434,149 + +0.3 434,149 + +1.5 434,149 + -0.3 434,149 + +0.9 434,149 + +1.1 434,149 + +0.4 434,150 - +0.5 434,227 + ydgK MCAODC_17850 0.17 +0.5 434,250 - ydgK MCAODC_17850 0.23 +1.4 434,417 + ydgK MCAODC_17850 0.61 -0.2 434,417 + ydgK MCAODC_17850 0.61 +1.4 434,417 + ydgK MCAODC_17850 0.61 +0.8 434,417 + ydgK MCAODC_17850 0.61 +1.3 434,418 - ydgK MCAODC_17850 0.61 -0.7 434,419 + ydgK MCAODC_17850 0.61 +1.1 434,419 + ydgK MCAODC_17850 0.61 +1.0 434,419 + ydgK MCAODC_17850 0.61 +0.2 434,419 + ydgK MCAODC_17850 0.61 +0.2 434,420 - ydgK MCAODC_17850 0.61 +0.5 434,434 + ydgK MCAODC_17850 0.64 -1.9 434,490 + ydgK MCAODC_17850 0.77 +0.7 434,588 + +0.6 434,597 + -0.1 434,598 - -0.7 434,603 + +0.5 434,701 + -2.4 434,964 + rsxA MCAODC_17855 0.51 +0.7 434,993 + rsxA MCAODC_17855 0.56 -0.1 435,187 + rsxA MCAODC_17855 0.89 +0.3 435,203 + +1.4 435,204 - +2.3 435,256 + -0.9 435,446 - rsxB MCAODC_17860 0.34 -0.8 435,592 + rsxB MCAODC_17860 0.59 -0.8 435,592 + rsxB MCAODC_17860 0.59 +0.1 435,610 + rsxB MCAODC_17860 0.63 +0.3 435,616 + rsxB MCAODC_17860 0.64 +0.6 435,616 + rsxB MCAODC_17860 0.64 -0.3 435,702 + rsxB MCAODC_17860 0.78 +0.1 436,079 + rsxC MCAODC_17865 0.11 -0.1 436,145 + rsxC MCAODC_17865 0.14 +0.9
Or see this region's nucleotide sequence