Strain Fitness in Escherichia coli ECRC101 around MCAODC_17595

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_17590 and MCAODC_17595 are separated by 87 nucleotidesMCAODC_17595 and MCAODC_17600 are separated by 34 nucleotidesMCAODC_17600 and MCAODC_17605 are separated by 500 nucleotidesMCAODC_17605 and ynfA are separated by 205 nucleotides MCAODC_17590: MCAODC_17590 - exodeoxyribonuclease VIII, at 381,636 to 383,105 _17590 MCAODC_17595: MCAODC_17595 - DNA-binding protein, at 383,193 to 383,429 _17595 MCAODC_17600: MCAODC_17600 - Integrase, cryptic prophage CP-933P, at 383,464 to 383,619 _17600 MCAODC_17605: MCAODC_17605 - Starvation-sensing protein, at 384,120 to 384,212 _17605 MCAODC_17610: ynfA - YnfA family protein, at 384,418 to 384,744 ynfA Position (kb) 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 382.353 kb on + strand, within MCAODC_17590at 382.422 kb on - strand, within MCAODC_17590at 382.608 kb on - strand, within MCAODC_17590at 383.103 kb on + strandat 383.103 kb on + strandat 383.103 kb on + strandat 383.167 kb on + strandat 383.188 kb on + strandat 383.309 kb on + strand, within MCAODC_17595at 383.309 kb on + strand, within MCAODC_17595at 383.309 kb on + strand, within MCAODC_17595at 383.309 kb on + strand, within MCAODC_17595at 383.309 kb on + strand, within MCAODC_17595at 383.310 kb on - strand, within MCAODC_17595at 383.509 kb on - strand, within MCAODC_17600at 383.521 kb on + strand, within MCAODC_17600at 383.523 kb on + strand, within MCAODC_17600at 383.638 kb on - strandat 383.698 kb on + strandat 383.699 kb on - strandat 383.901 kb on + strandat 383.938 kb on + strandat 383.946 kb on + strandat 384.128 kb on + strandat 384.128 kb on + strandat 384.128 kb on + strandat 384.129 kb on - strandat 384.129 kb on - strandat 384.132 kb on - strand, within MCAODC_17605at 384.268 kb on + strandat 384.268 kb on + strandat 384.273 kb on + strandat 384.274 kb on - strandat 384.276 kb on - strandat 384.321 kb on + strandat 384.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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382,353 + MCAODC_17590 0.49 -0.3
382,422 - MCAODC_17590 0.53 +1.7
382,608 - MCAODC_17590 0.66 -0.3
383,103 + +0.2
383,103 + +0.5
383,103 + +2.3
383,167 + -1.3
383,188 + -0.8
383,309 + MCAODC_17595 0.49 -1.1
383,309 + MCAODC_17595 0.49 -0.4
383,309 + MCAODC_17595 0.49 -0.3
383,309 + MCAODC_17595 0.49 +1.2
383,309 + MCAODC_17595 0.49 +0.5
383,310 - MCAODC_17595 0.49 -0.4
383,509 - MCAODC_17600 0.29 -0.0
383,521 + MCAODC_17600 0.37 -0.5
383,523 + MCAODC_17600 0.38 -0.2
383,638 - +0.3
383,698 + -0.1
383,699 - +1.6
383,901 + +1.1
383,938 + +0.3
383,946 + +1.5
384,128 + -0.4
384,128 + +1.0
384,128 + -0.3
384,129 - +0.2
384,129 - +0.7
384,132 - MCAODC_17605 0.13 +0.3
384,268 + -0.6
384,268 + -1.2
384,273 + -2.0
384,274 - +0.8
384,276 - -1.3
384,321 + -0.9
384,323 + -0.7

Or see this region's nucleotide sequence