Strain Fitness in Escherichia coli ECRC101 around MCAODC_17580

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_17575 and tnp-IS3 are separated by 5 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and MCAODC_17590 overlap by 35 nucleotides MCAODC_17575: MCAODC_17575 - exonuclease, at 379,321 to 380,451 _17575 MCAODC_17580: tnp-IS3 - IS3 family transposase, at 380,457 to 380,783 tnp-IS3 MCAODC_17585: tnp-IS3 - IS3 family transposase, at 380,783 to 381,670 tnp-IS3 MCAODC_17590: MCAODC_17590 - exodeoxyribonuclease VIII, at 381,636 to 383,105 _17590 Position (kb) 380 381Strain fitness (log2 ratio) -1 0 1 2at 379.555 kb on + strand, within MCAODC_17575at 379.555 kb on + strand, within MCAODC_17575at 379.557 kb on + strand, within MCAODC_17575at 379.677 kb on + strand, within MCAODC_17575

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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379,555 + MCAODC_17575 0.21 +2.3
379,555 + MCAODC_17575 0.21 -0.2
379,557 + MCAODC_17575 0.21 +2.1
379,677 + MCAODC_17575 0.31 -0.2

Or see this region's nucleotide sequence