Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adhP and maeA are separated by 133 nucleotides maeA and sra are separated by 156 nucleotides sra and bdm are separated by 101 nucleotides bdm and osmC are separated by 344 nucleotides
MCAODC_16575: adhP - alcohol dehydrogenase AdhP, at 211,644 to 212,654
adhP
MCAODC_16580: maeA - malate dehydrogenase, at 212,788 to 214,485
maeA
MCAODC_16585: sra - stationary-phase-induced ribosome-associated protein, at 214,642 to 214,779
sra
MCAODC_16590: bdm - biofilm-dependent modulation protein, at 214,881 to 215,096
bdm
MCAODC_16595: osmC - peroxiredoxin OsmC, at 215,441 to 215,872
osmC
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.862 kb on + strand, within adhP at 211.945 kb on - strand, within adhP at 212.022 kb on - strand, within adhP at 212.059 kb on - strand, within adhP at 212.153 kb on - strand, within adhP at 212.153 kb on - strand, within adhP at 212.153 kb on - strand, within adhP at 212.157 kb on - strand, within adhP at 212.204 kb on - strand, within adhP at 212.226 kb on - strand, within adhP at 212.226 kb on - strand, within adhP at 212.526 kb on - strand, within adhP at 212.548 kb on - strand, within adhP at 212.548 kb on - strand, within adhP at 212.548 kb on - strand, within adhP at 212.636 kb on + strand at 212.654 kb on + strand at 212.654 kb on + strand at 212.655 kb on - strand at 212.707 kb on + strand at 212.789 kb on + strand at 212.790 kb on - strand at 212.790 kb on - strand at 212.944 kb on - strand at 213.042 kb on + strand, within maeA at 213.064 kb on - strand, within maeA at 213.120 kb on - strand, within maeA at 213.147 kb on + strand, within maeA at 213.271 kb on - strand, within maeA at 213.344 kb on - strand, within maeA at 213.487 kb on - strand, within maeA at 213.518 kb on - strand, within maeA at 213.855 kb on + strand, within maeA at 213.858 kb on - strand, within maeA at 213.921 kb on - strand, within maeA at 213.921 kb on - strand, within maeA at 213.921 kb on - strand, within maeA at 214.015 kb on - strand, within maeA at 214.045 kb on - strand, within maeA at 214.176 kb on - strand, within maeA at 214.180 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.371 kb on + strand at 214.451 kb on + strand at 214.566 kb on - strand at 214.566 kb on - strand at 214.567 kb on + strand at 214.577 kb on - strand at 214.682 kb on - strand, within sra at 214.682 kb on - strand, within sra at 214.682 kb on - strand, within sra at 214.711 kb on + strand, within sra at 214.712 kb on - strand, within sra at 214.753 kb on - strand, within sra at 214.809 kb on - strand at 214.857 kb on - strand at 214.874 kb on + strand at 214.875 kb on - strand at 214.875 kb on - strand at 214.889 kb on + strand at 214.912 kb on + strand, within bdm at 214.913 kb on - strand, within bdm at 214.934 kb on + strand, within bdm at 214.934 kb on + strand, within bdm at 215.122 kb on - strand at 215.191 kb on + strand at 215.272 kb on - strand at 215.294 kb on + strand at 215.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 211,862 + adhP MCAODC_16575 0.22 +1.0 211,945 - adhP MCAODC_16575 0.30 +0.4 212,022 - adhP MCAODC_16575 0.37 +1.1 212,059 - adhP MCAODC_16575 0.41 +1.7 212,153 - adhP MCAODC_16575 0.50 +0.7 212,153 - adhP MCAODC_16575 0.50 -1.3 212,153 - adhP MCAODC_16575 0.50 -0.1 212,157 - adhP MCAODC_16575 0.51 +0.3 212,204 - adhP MCAODC_16575 0.55 +0.1 212,226 - adhP MCAODC_16575 0.58 +0.2 212,226 - adhP MCAODC_16575 0.58 +1.5 212,526 - adhP MCAODC_16575 0.87 +1.8 212,548 - adhP MCAODC_16575 0.89 +0.4 212,548 - adhP MCAODC_16575 0.89 +0.4 212,548 - adhP MCAODC_16575 0.89 +1.7 212,636 + +1.2 212,654 + +0.9 212,654 + +2.7 212,655 - +1.2 212,707 + +1.3 212,789 + -0.0 212,790 - -2.0 212,790 - -0.1 212,944 - +0.0 213,042 + maeA MCAODC_16580 0.15 +0.2 213,064 - maeA MCAODC_16580 0.16 +0.9 213,120 - maeA MCAODC_16580 0.20 +0.3 213,147 + maeA MCAODC_16580 0.21 -0.9 213,271 - maeA MCAODC_16580 0.28 -0.3 213,344 - maeA MCAODC_16580 0.33 +0.9 213,487 - maeA MCAODC_16580 0.41 -0.6 213,518 - maeA MCAODC_16580 0.43 +2.0 213,855 + maeA MCAODC_16580 0.63 -0.3 213,858 - maeA MCAODC_16580 0.63 -0.5 213,921 - maeA MCAODC_16580 0.67 -0.5 213,921 - maeA MCAODC_16580 0.67 -0.0 213,921 - maeA MCAODC_16580 0.67 +0.5 214,015 - maeA MCAODC_16580 0.72 -0.3 214,045 - maeA MCAODC_16580 0.74 -0.2 214,176 - maeA MCAODC_16580 0.82 -0.1 214,180 - maeA MCAODC_16580 0.82 +0.5 214,221 - maeA MCAODC_16580 0.84 -0.1 214,221 - maeA MCAODC_16580 0.84 -0.5 214,221 - maeA MCAODC_16580 0.84 -0.8 214,371 + +1.4 214,451 + +0.4 214,566 - -0.3 214,566 - +1.7 214,567 + -0.5 214,577 - -1.2 214,682 - sra MCAODC_16585 0.29 +0.7 214,682 - sra MCAODC_16585 0.29 -0.4 214,682 - sra MCAODC_16585 0.29 +0.4 214,711 + sra MCAODC_16585 0.50 +1.3 214,712 - sra MCAODC_16585 0.51 +0.3 214,753 - sra MCAODC_16585 0.80 +1.7 214,809 - +1.5 214,857 - +0.5 214,874 + +0.5 214,875 - -1.6 214,875 - +0.5 214,889 + -0.1 214,912 + bdm MCAODC_16590 0.14 +0.1 214,913 - bdm MCAODC_16590 0.15 +1.1 214,934 + bdm MCAODC_16590 0.25 +2.7 214,934 + bdm MCAODC_16590 0.25 +0.8 215,122 - -0.8 215,191 + -0.4 215,272 - -0.1 215,294 + +1.5 215,452 + -3.6
Or see this region's nucleotide sequence