Strain Fitness in Escherichia coli ECRC101 around MCAODC_16535

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespR1 and MCAODC_16535 are separated by 62 nucleotidesMCAODC_16535 and MCAODC_16540 are separated by 122 nucleotidesMCAODC_16540 and ompC2 are separated by 168 nucleotides MCAODC_16530: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 201,175 to 202,434 espR1 MCAODC_16535: MCAODC_16535 - leucine Rich Repeat family protein, at 202,497 to 203,129 _16535 MCAODC_16540: MCAODC_16540 - IpaH-like protein, at 203,252 to 203,755 _16540 MCAODC_16545: ompC2 - Outer membrane porin C 2, at 203,924 to 205,024 ompC2 Position (kb) 202 203 204Strain fitness (log2 ratio) -1 0 1 2at 203.500 kb on + strand, within MCAODC_16540at 203.881 kb on - strandat 203.926 kb on - strandat 204.114 kb on - strand, within ompC2at 204.114 kb on - strand, within ompC2

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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203,500 + MCAODC_16540 0.49 +2.1
203,881 - -0.1
203,926 - +2.1
204,114 - ompC2 MCAODC_16545 0.17 +1.1
204,114 - ompC2 MCAODC_16545 0.17 +0.5

Or see this region's nucleotide sequence