Strain Fitness in Escherichia coli ECRC101 around MCAODC_12100

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
2,392,293	+	hcaD	MCAODC_12090	0.90	+1.0
2,392,300	+				+1.4
2,392,397	-				+1.3
2,392,397	-				+0.6
2,392,421	-				+0.3
2,392,429	-				-2.1
2,392,429	-				-2.0
2,392,472	+				-0.4
2,392,473	-				-1.8
2,392,542	+	hcaB	MCAODC_12095	0.14	-0.7
2,392,542	+	hcaB	MCAODC_12095	0.14	-2.9
2,392,543	-	hcaB	MCAODC_12095	0.14	-2.0
2,392,543	-	hcaB	MCAODC_12095	0.14	-1.5
2,392,552	+	hcaB	MCAODC_12095	0.15	-0.4
2,392,587	-	hcaB	MCAODC_12095	0.20	-0.3
2,392,587	-	hcaB	MCAODC_12095	0.20	+0.3
2,392,678	+	hcaB	MCAODC_12095	0.31	+1.0
2,392,678	+	hcaB	MCAODC_12095	0.31	-0.6
2,392,707	-	hcaB	MCAODC_12095	0.34	-0.8
2,392,726	-	hcaB	MCAODC_12095	0.37	-1.5
2,392,742	-	hcaB	MCAODC_12095	0.39	-0.7
2,392,763	-	hcaB	MCAODC_12095	0.41	+0.5
2,392,881	+	hcaB	MCAODC_12095	0.56	-0.2
2,392,946	-	hcaB	MCAODC_12095	0.64	-1.5
2,392,946	-	hcaB	MCAODC_12095	0.64	+1.4
2,393,041	-	hcaB	MCAODC_12095	0.76	-0.6
2,393,080	+	hcaB	MCAODC_12095	0.80	+0.2
2,393,080	+	hcaB	MCAODC_12095	0.80	-0.3
2,393,081	-	hcaB	MCAODC_12095	0.80	-1.0
2,393,081	-	hcaB	MCAODC_12095	0.80	-0.4
2,393,081	-	hcaB	MCAODC_12095	0.80	+0.8
2,393,162	-				+0.3
2,393,255	-				+0.4
2,393,287	+	hcaC	MCAODC_12100	0.16	+2.3
2,393,288	-	hcaC	MCAODC_12100	0.16	-1.0
2,393,294	+	hcaC	MCAODC_12100	0.18	+2.1
2,393,294	+	hcaC	MCAODC_12100	0.18	-0.1
2,393,295	-	hcaC	MCAODC_12100	0.18	+1.3
2,393,326	+	hcaC	MCAODC_12100	0.28	-0.7
2,393,365	+	hcaC	MCAODC_12100	0.40	-1.9
2,393,421	+	hcaC	MCAODC_12100	0.58	+0.6
2,393,421	+	hcaC	MCAODC_12100	0.58	+0.6
2,393,422	-	hcaC	MCAODC_12100	0.58	-0.9
2,393,422	-	hcaC	MCAODC_12100	0.58	+0.9
2,393,422	-	hcaC	MCAODC_12100	0.58	-1.1
2,393,422	-	hcaC	MCAODC_12100	0.58	+0.2
2,393,451	-	hcaC	MCAODC_12100	0.67	-0.6
2,393,544	-				+0.2
2,393,544	-				+0.3
2,393,544	-				+0.5
2,393,565	+				-2.9
2,393,566	-				+1.4
2,393,566	-				-0.0
2,393,566	-				-0.9
2,393,576	+				+1.0
2,393,677	+	hcaF	MCAODC_12105	0.23	+0.9
2,393,677	+	hcaF	MCAODC_12105	0.23	+0.3
2,393,677	+	hcaF	MCAODC_12105	0.23	-1.5
2,393,678	-	hcaF	MCAODC_12105	0.24	-0.9
2,393,678	-	hcaF	MCAODC_12105	0.24	+0.1
2,393,678	-	hcaF	MCAODC_12105	0.24	+0.6
2,393,678	-	hcaF	MCAODC_12105	0.24	-1.4
2,393,678	-	hcaF	MCAODC_12105	0.24	-0.6
2,393,739	+	hcaF	MCAODC_12105	0.35	+0.1
2,393,740	-	hcaF	MCAODC_12105	0.35	+0.8
2,393,764	-	hcaF	MCAODC_12105	0.40	+1.6
2,393,781	+	hcaF	MCAODC_12105	0.43	-0.1
2,393,782	-	hcaF	MCAODC_12105	0.44	+0.3
2,393,874	-	hcaF	MCAODC_12105	0.61	-1.0
2,393,951	-	hcaF	MCAODC_12105	0.76	-2.3
2,393,951	-	hcaF	MCAODC_12105	0.76	-0.6
2,394,048	+				+0.8
2,394,048	+				-1.6
2,394,048	+				-0.0
2,394,049	-				+0.4
2,394,049	-				-1.6
2,394,049	-				-0.2
2,394,049	-				-1.1
2,394,190	+				-0.2
2,394,191	-				-1.4
2,394,192	+				-0.6
2,394,192	+				-0.5
2,394,193	-				+0.4
2,394,193	-				+0.4
2,394,193	-				-0.9
2,394,193	-				+0.8
2,394,196	+				-1.5
2,394,196	+				-0.0
2,394,196	+				-0.5
2,394,196	+				-3.1
2,394,196	+				+0.3
2,394,197	-				-0.2
2,394,197	-				+0.4
2,394,197	-				-0.0
2,394,199	+				+0.0
2,394,287	-	hcaE	MCAODC_12110	0.16	-0.3
2,394,386	-	hcaE	MCAODC_12110	0.23	+1.4
2,394,386	-	hcaE	MCAODC_12110	0.23	+0.9
2,394,415	+	hcaE	MCAODC_12110	0.25	-0.9
2,394,415	+	hcaE	MCAODC_12110	0.25	-0.6
2,394,416	-	hcaE	MCAODC_12110	0.25	+0.6
2,394,509	-	hcaE	MCAODC_12110	0.32	+0.7
2,394,514	+	hcaE	MCAODC_12110	0.33	-1.4
2,394,514	+	hcaE	MCAODC_12110	0.33	+0.6
2,394,548	+	hcaE	MCAODC_12110	0.35	-1.2