Strain Fitness in Escherichia coli ECRC101 around MCAODC_11575

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_11570 and MCAODC_11575 are separated by 149 nucleotidesMCAODC_11575 and MCAODC_11580 are separated by 4 nucleotidesMCAODC_11580 and rrrD are separated by 42 nucleotidesrrrD and insE are separated by 75 nucleotides MCAODC_11570: MCAODC_11570 - DUF1737 domain-containing protein, at 2,298,883 to 2,300,736 _11570 MCAODC_11575: MCAODC_11575 - holin, at 2,300,886 to 2,301,101 _11575 MCAODC_11580: MCAODC_11580 - YdfR family protein, at 2,301,106 to 2,301,438 _11580 MCAODC_11585: rrrD - lysozyme, at 2,301,481 to 2,301,711 rrrD MCAODC_11590: insE - Transposase InsE and inactivated derivatives, at 2,301,787 to 2,302,167 insE Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -1 0 1at 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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2,301,441 + -0.6
2,301,441 + -1.3
2,301,441 + +1.4
2,301,441 + -0.5
2,301,703 - -0.6

Or see this region's nucleotide sequence