Strain Fitness in Escherichia coli ECRC101 around MCAODC_03915

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_03910 and rpoC are separated by 212 nucleotidesrpoC and rpoB_R687H are separated by 76 nucleotides MCAODC_03910: MCAODC_03910 - stationary phase growth adaptation protein, at 787,027 to 787,470 _03910 MCAODC_03915: rpoC - DNA-directed RNA polymerase subunit beta', at 787,683 to 791,906 rpoC MCAODC_03920: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 791,983 to 796,011 _R687H Position (kb) 787 788 789 790 791 792Strain fitness (log2 ratio) -2 -1 0 1 2at 786.808 kb on + strandat 786.808 kb on + strandat 786.809 kb on - strandat 786.809 kb on - strandat 786.816 kb on + strandat 786.816 kb on + strandat 786.817 kb on - strandat 786.820 kb on + strandat 786.821 kb on - strandat 786.828 kb on + strandat 786.829 kb on - strandat 786.829 kb on - strandat 786.829 kb on - strandat 786.829 kb on - strandat 786.829 kb on - strandat 786.833 kb on + strandat 786.834 kb on - strandat 786.834 kb on - strandat 786.965 kb on + strandat 786.988 kb on + strandat 786.988 kb on + strandat 786.988 kb on + strandat 786.988 kb on + strandat 786.988 kb on + strandat 786.989 kb on - strandat 786.989 kb on - strandat 787.028 kb on + strandat 787.029 kb on - strandat 787.029 kb on - strandat 787.029 kb on - strandat 787.029 kb on - strandat 787.038 kb on + strandat 787.091 kb on + strand, within MCAODC_03910at 787.091 kb on + strand, within MCAODC_03910at 787.092 kb on - strand, within MCAODC_03910at 787.092 kb on - strand, within MCAODC_03910at 787.101 kb on + strand, within MCAODC_03910at 787.102 kb on - strand, within MCAODC_03910at 787.114 kb on + strand, within MCAODC_03910at 787.115 kb on - strand, within MCAODC_03910at 787.136 kb on + strand, within MCAODC_03910at 787.136 kb on + strand, within MCAODC_03910at 787.136 kb on + strand, within MCAODC_03910at 787.137 kb on - strand, within MCAODC_03910at 787.137 kb on - strand, within MCAODC_03910at 787.137 kb on - strand, within MCAODC_03910at 787.140 kb on + strand, within MCAODC_03910at 787.140 kb on + strand, within MCAODC_03910at 787.141 kb on - strand, within MCAODC_03910at 787.141 kb on - strand, within MCAODC_03910at 787.158 kb on + strand, within MCAODC_03910at 787.158 kb on + strand, within MCAODC_03910at 787.158 kb on + strand, within MCAODC_03910at 787.159 kb on - strand, within MCAODC_03910at 787.185 kb on + strand, within MCAODC_03910at 787.186 kb on - strand, within MCAODC_03910at 787.186 kb on - strand, within MCAODC_03910at 787.195 kb on + strand, within MCAODC_03910at 787.196 kb on - strand, within MCAODC_03910at 787.215 kb on + strand, within MCAODC_03910at 787.216 kb on - strand, within MCAODC_03910at 787.216 kb on - strand, within MCAODC_03910at 787.259 kb on + strand, within MCAODC_03910at 787.259 kb on + strand, within MCAODC_03910at 787.260 kb on - strand, within MCAODC_03910at 787.265 kb on - strand, within MCAODC_03910at 787.298 kb on + strand, within MCAODC_03910at 787.299 kb on - strand, within MCAODC_03910at 787.325 kb on + strand, within MCAODC_03910at 787.325 kb on + strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.326 kb on - strand, within MCAODC_03910at 787.329 kb on + strand, within MCAODC_03910at 787.348 kb on + strand, within MCAODC_03910at 787.349 kb on - strand, within MCAODC_03910at 787.379 kb on + strand, within MCAODC_03910at 787.379 kb on + strand, within MCAODC_03910at 787.380 kb on - strand, within MCAODC_03910at 787.380 kb on - strand, within MCAODC_03910at 787.383 kb on + strand, within MCAODC_03910at 787.384 kb on - strand, within MCAODC_03910at 787.384 kb on - strand, within MCAODC_03910at 787.408 kb on + strand, within MCAODC_03910at 787.481 kb on + strandat 787.490 kb on + strandat 787.490 kb on + strandat 787.500 kb on + strandat 787.500 kb on + strandat 787.500 kb on + strandat 787.500 kb on + strandat 787.500 kb on + strandat 787.501 kb on - strandat 787.501 kb on - strandat 787.503 kb on + strandat 787.504 kb on - strandat 787.504 kb on - strandat 787.532 kb on + strandat 787.532 kb on + strandat 787.532 kb on + strandat 787.552 kb on + strandat 787.552 kb on + strandat 787.556 kb on - strandat 787.565 kb on + strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.574 kb on + strandat 787.575 kb on - strandat 787.595 kb on + strandat 787.595 kb on + strandat 787.662 kb on - strandat 787.685 kb on - strandat 787.685 kb on - strandat 787.800 kb on - strandat 791.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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786,808 + -0.6
786,808 + +0.3
786,809 - -0.1
786,809 - -0.5
786,816 + +1.5
786,816 + +0.7
786,817 - -0.4
786,820 + -1.5
786,821 - -0.2
786,828 + -0.5
786,829 - -0.0
786,829 - +0.4
786,829 - +0.7
786,829 - -0.1
786,829 - -0.5
786,833 + -0.8
786,834 - +1.4
786,834 - -0.5
786,965 + -0.3
786,988 + -0.2
786,988 + -0.5
786,988 + +0.3
786,988 + +0.6
786,988 + +1.0
786,989 - -0.2
786,989 - -0.6
787,028 + -1.5
787,029 - +0.3
787,029 - -0.6
787,029 - -0.7
787,029 - -0.1
787,038 + +1.3
787,091 + MCAODC_03910 0.14 -1.6
787,091 + MCAODC_03910 0.14 -0.5
787,092 - MCAODC_03910 0.15 -0.3
787,092 - MCAODC_03910 0.15 +0.7
787,101 + MCAODC_03910 0.17 +0.5
787,102 - MCAODC_03910 0.17 +0.3
787,114 + MCAODC_03910 0.20 -0.7
787,115 - MCAODC_03910 0.20 -0.0
787,136 + MCAODC_03910 0.25 -1.0
787,136 + MCAODC_03910 0.25 -0.3
787,136 + MCAODC_03910 0.25 -0.4
787,137 - MCAODC_03910 0.25 -1.4
787,137 - MCAODC_03910 0.25 +0.5
787,137 - MCAODC_03910 0.25 +0.4
787,140 + MCAODC_03910 0.25 -0.7
787,140 + MCAODC_03910 0.25 -1.5
787,141 - MCAODC_03910 0.26 -0.6
787,141 - MCAODC_03910 0.26 +0.6
787,158 + MCAODC_03910 0.30 -0.7
787,158 + MCAODC_03910 0.30 -1.4
787,158 + MCAODC_03910 0.30 +1.8
787,159 - MCAODC_03910 0.30 +2.0
787,185 + MCAODC_03910 0.36 -0.5
787,186 - MCAODC_03910 0.36 -0.7
787,186 - MCAODC_03910 0.36 +1.3
787,195 + MCAODC_03910 0.38 -1.5
787,196 - MCAODC_03910 0.38 -0.5
787,215 + MCAODC_03910 0.42 +0.8
787,216 - MCAODC_03910 0.43 +0.6
787,216 - MCAODC_03910 0.43 -0.7
787,259 + MCAODC_03910 0.52 -2.5
787,259 + MCAODC_03910 0.52 +0.3
787,260 - MCAODC_03910 0.52 -0.8
787,265 - MCAODC_03910 0.54 -1.0
787,298 + MCAODC_03910 0.61 +2.6
787,299 - MCAODC_03910 0.61 -0.4
787,325 + MCAODC_03910 0.67 +0.7
787,325 + MCAODC_03910 0.67 -0.4
787,326 - MCAODC_03910 0.67 +0.1
787,326 - MCAODC_03910 0.67 +0.2
787,326 - MCAODC_03910 0.67 +0.5
787,326 - MCAODC_03910 0.67 -1.9
787,326 - MCAODC_03910 0.67 +1.0
787,326 - MCAODC_03910 0.67 +1.6
787,329 + MCAODC_03910 0.68 -0.2
787,348 + MCAODC_03910 0.72 -1.3
787,349 - MCAODC_03910 0.73 +0.6
787,379 + MCAODC_03910 0.79 +0.4
787,379 + MCAODC_03910 0.79 -1.4
787,380 - MCAODC_03910 0.80 +0.3
787,380 - MCAODC_03910 0.80 -0.3
787,383 + MCAODC_03910 0.80 -2.6
787,384 - MCAODC_03910 0.80 -2.1
787,384 - MCAODC_03910 0.80 +0.7
787,408 + MCAODC_03910 0.86 +0.2
787,481 + -0.6
787,490 + -1.0
787,490 + +1.8
787,500 + -0.9
787,500 + -1.7
787,500 + -0.1
787,500 + -0.4
787,500 + +0.3
787,501 - -0.7
787,501 - -0.7
787,503 + -0.0
787,504 - -0.8
787,504 - +0.3
787,532 + -0.3
787,532 + +0.6
787,532 + -0.7
787,552 + -0.3
787,552 + -1.4
787,556 - +0.1
787,565 + +0.5
787,566 - -0.9
787,566 - -1.1
787,566 - -0.7
787,566 - -0.9
787,574 + +0.1
787,575 - -0.5
787,595 + -0.7
787,595 + -0.9
787,662 - -0.8
787,685 - +0.7
787,685 - -0.7
787,800 - -0.4
791,928 - -0.9

Or see this region's nucleotide sequence