Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt map and glnD are separated by 61 nucleotides glnD and dapD are separated by 30 nucleotides
MCAODC_00745: map - type I methionyl aminopeptidase, at 124,218 to 125,012
map
MCAODC_00750: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 125,074 to 127,746
glnD
MCAODC_00755: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 127,777 to 128,601
dapD
Position (kb)
125
126
127
128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 124.091 kb on - strand at 124.093 kb on + strand at 124.094 kb on - strand at 124.095 kb on + strand at 124.095 kb on + strand at 124.096 kb on - strand at 124.096 kb on - strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.178 kb on + strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 124.179 kb on - strand at 125.048 kb on + strand at 125.053 kb on + strand at 125.181 kb on - strand at 127.737 kb on + strand at 127.753 kb on + strand at 127.753 kb on + strand at 127.759 kb on + strand at 127.772 kb on + strand at 128.606 kb on - strand at 128.653 kb on + strand at 128.664 kb on - strand at 128.689 kb on - strand at 128.689 kb on - strand at 128.722 kb on + strand at 128.723 kb on - strand at 128.740 kb on + strand at 128.740 kb on + strand at 128.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 124,091 - +0.8 124,093 + -2.1 124,094 - +1.3 124,095 + -1.0 124,095 + -0.7 124,096 - +1.6 124,096 - +0.7 124,178 + -0.1 124,178 + +0.5 124,178 + +0.3 124,178 + +1.8 124,178 + -1.8 124,178 + -0.5 124,178 + -0.3 124,178 + +0.0 124,178 + -0.3 124,178 + +0.2 124,178 + -0.2 124,178 + +0.7 124,178 + +0.3 124,179 - +0.2 124,179 - +1.2 124,179 - +2.3 124,179 - -0.6 124,179 - +0.2 124,179 - -1.0 124,179 - +1.7 124,179 - +1.3 124,179 - -2.1 124,179 - -2.4 124,179 - +1.5 124,179 - +0.1 124,179 - -1.5 124,179 - +0.0 125,048 + -1.7 125,053 + -2.2 125,181 - +0.9 127,737 + +0.6 127,753 + +1.1 127,753 + +0.4 127,759 + -0.7 127,772 + +0.3 128,606 - -0.2 128,653 + +1.7 128,664 - +0.1 128,689 - -1.0 128,689 - -2.2 128,722 + -0.6 128,723 - -0.4 128,740 + +1.4 128,740 + -0.8 128,741 - -1.3
Or see this region's nucleotide sequence