Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12000

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,174,823	+		ABI39_RS11995	0.47	+0.7
3,174,903	-		ABI39_RS11995	0.52	+0.2
3,174,903	-		ABI39_RS11995	0.52	-0.0
3,174,991	+		ABI39_RS11995	0.57	+0.6
3,174,991	+		ABI39_RS11995	0.57	+0.5
3,175,064	-		ABI39_RS11995	0.61	+0.5
3,175,065	+		ABI39_RS11995	0.61	-0.1
3,175,180	-		ABI39_RS11995	0.68	+0.3
3,175,180	-		ABI39_RS11995	0.68	-0.3
3,175,187	-		ABI39_RS11995	0.68	-0.3
3,175,213	+		ABI39_RS11995	0.70	+0.2
3,175,216	+		ABI39_RS11995	0.70	+0.3
3,175,303	-		ABI39_RS11995	0.75	-0.7
3,175,345	-		ABI39_RS11995	0.77	+0.0
3,175,396	-		ABI39_RS11995	0.80	-0.4
3,175,402	+		ABI39_RS11995	0.81	+0.9
3,175,402	+		ABI39_RS11995	0.81	+2.9
3,175,406	+		ABI39_RS11995	0.81	+0.7
3,175,424	-		ABI39_RS11995	0.82	-0.0
3,175,432	-		ABI39_RS11995	0.82	+0.3
3,175,545	-		ABI39_RS11995	0.89	+1.5
3,175,546	+		ABI39_RS11995	0.89	-0.7
3,175,666	+				+1.1
3,175,789	-				-0.9
3,175,803	-				-1.7
3,175,809	+				-0.4
3,175,810	-				-1.0
3,175,813	-				-0.2
3,175,876	+				+0.2
3,175,876	+				+1.6
3,175,906	+				+2.5
3,175,922	+		ABI39_RS12000	0.10	+1.5
3,175,923	-		ABI39_RS12000	0.10	-0.8
3,176,001	-		ABI39_RS12000	0.17	+0.2
3,176,020	+		ABI39_RS12000	0.19	+0.7
3,176,026	+		ABI39_RS12000	0.19	+3.8
3,176,027	-		ABI39_RS12000	0.19	+0.6
3,176,027	-		ABI39_RS12000	0.19	+0.2
3,176,073	+		ABI39_RS12000	0.23	+3.0
3,176,074	-		ABI39_RS12000	0.23	+0.9
3,176,110	+		ABI39_RS12000	0.27	+3.4
3,176,111	-		ABI39_RS12000	0.27	+0.9
3,176,163	+		ABI39_RS12000	0.31	-0.4
3,176,176	-		ABI39_RS12000	0.32	+0.3
3,176,184	-		ABI39_RS12000	0.33	-0.5
3,176,184	-		ABI39_RS12000	0.33	+0.9
3,176,207	-		ABI39_RS12000	0.35	+0.4
3,176,207	-		ABI39_RS12000	0.35	+0.5
3,176,280	+		ABI39_RS12000	0.41	+0.6
3,176,280	+		ABI39_RS12000	0.41	+3.7
3,176,321	+		ABI39_RS12000	0.45	+0.5
3,176,437	-		ABI39_RS12000	0.55	+0.4
3,176,437	-		ABI39_RS12000	0.55	+2.2
3,176,441	+		ABI39_RS12000	0.55	+1.1
3,176,527	+		ABI39_RS12000	0.63	+1.4
3,176,531	-		ABI39_RS12000	0.63	+0.6
3,176,534	+		ABI39_RS12000	0.63	+0.2
3,176,535	-		ABI39_RS12000	0.63	+0.7
3,176,537	-		ABI39_RS12000	0.63	+0.3
3,176,576	-		ABI39_RS12000	0.67	+0.6
3,176,618	+		ABI39_RS12000	0.70	+2.6
3,176,627	+		ABI39_RS12000	0.71	+1.9
3,176,631	-		ABI39_RS12000	0.72	-0.8
3,176,757	-		ABI39_RS12000	0.82	-0.9
3,176,909	+				+3.5
3,176,909	+				+2.7
3,176,933	+				+5.0
3,176,974	-				+0.1
3,176,974	-				-1.0
3,176,974	-				-0.2
3,177,016	+				+3.1
3,177,058	-				+0.4
3,177,247	-		ABI39_RS12005	0.14	-0.4
3,177,247	-		ABI39_RS12005	0.14	-0.3
3,177,278	-		ABI39_RS12005	0.16	+0.9
3,177,278	-		ABI39_RS12005	0.16	+0.5
3,177,305	+		ABI39_RS12005	0.18	+0.7
3,177,335	-		ABI39_RS12005	0.21	-0.2
3,177,457	-		ABI39_RS12005	0.31	+0.9
3,177,479	+		ABI39_RS12005	0.32	+0.4
3,177,481	+		ABI39_RS12005	0.33	+1.6
3,177,482	-		ABI39_RS12005	0.33	-0.6
3,177,483	+		ABI39_RS12005	0.33	+1.2
3,177,484	-		ABI39_RS12005	0.33	-0.8
3,177,580	+		ABI39_RS12005	0.40	+2.9
3,177,580	+		ABI39_RS12005	0.40	+0.7
3,177,581	-		ABI39_RS12005	0.41	-0.3
3,177,602	+		ABI39_RS12005	0.42	+0.7
3,177,616	-		ABI39_RS12005	0.43	+0.3
3,177,691	+		ABI39_RS12005	0.49	+1.3
3,177,720	-		ABI39_RS12005	0.52	-0.9
3,177,746	-		ABI39_RS12005	0.54	-0.2
3,177,761	-		ABI39_RS12005	0.55	+1.5
3,177,780	-		ABI39_RS12005	0.56	+0.1
3,177,805	+		ABI39_RS12005	0.58	+3.6
3,177,806	-		ABI39_RS12005	0.59	-0.9
3,177,839	+		ABI39_RS12005	0.61	+1.6
3,177,916	+		ABI39_RS12005	0.67	+1.5
3,177,947	+		ABI39_RS12005	0.70	-0.1