Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpX and clpP are separated by 125 nucleotides clpP and tig are separated by 244 nucleotides
MCAODC_27555: clpX - ATP-dependent protease ATP-binding subunit ClpX, at 2,255,730 to 2,257,004
clpX
MCAODC_27560: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 2,257,130 to 2,257,753
clpP
MCAODC_27565: tig - trigger factor, at 2,257,998 to 2,259,296
tig
Position (kb)
2257
2258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2256.321 kb on - strand, within clpX at 2256.411 kb on - strand, within clpX at 2256.461 kb on - strand, within clpX at 2256.728 kb on - strand, within clpX at 2256.728 kb on - strand, within clpX at 2256.728 kb on - strand, within clpX at 2256.849 kb on - strand, within clpX at 2256.900 kb on - strand at 2256.902 kb on - strand at 2257.100 kb on - strand at 2257.100 kb on - strand at 2257.103 kb on + strand at 2257.104 kb on - strand at 2257.104 kb on - strand at 2257.104 kb on - strand at 2257.104 kb on - strand at 2257.104 kb on - strand at 2257.104 kb on - strand at 2257.136 kb on - strand at 2257.136 kb on - strand at 2257.136 kb on - strand at 2257.255 kb on + strand, within clpP at 2257.268 kb on - strand, within clpP at 2257.487 kb on - strand, within clpP at 2257.487 kb on - strand, within clpP at 2257.523 kb on - strand, within clpP at 2257.533 kb on + strand, within clpP at 2257.644 kb on - strand, within clpP at 2257.654 kb on - strand, within clpP at 2257.799 kb on - strand at 2257.799 kb on - strand at 2257.799 kb on - strand at 2257.816 kb on - strand at 2257.823 kb on - strand at 2257.854 kb on - strand at 2257.864 kb on + strand at 2257.986 kb on - strand at 2258.262 kb on + strand, within tig at 2258.263 kb on - strand, within tig at 2258.263 kb on - strand, within tig at 2258.379 kb on - strand, within tig at 2258.484 kb on - strand, within tig at 2258.484 kb on - strand, within tig at 2258.613 kb on - strand, within tig
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 2,256,321 - clpX MCAODC_27555 0.46 -1.9 2,256,411 - clpX MCAODC_27555 0.53 +0.5 2,256,461 - clpX MCAODC_27555 0.57 -0.2 2,256,728 - clpX MCAODC_27555 0.78 -0.4 2,256,728 - clpX MCAODC_27555 0.78 -0.6 2,256,728 - clpX MCAODC_27555 0.78 +0.5 2,256,849 - clpX MCAODC_27555 0.88 +3.1 2,256,900 - -1.1 2,256,902 - -0.4 2,257,100 - +1.2 2,257,100 - +1.0 2,257,103 + +0.1 2,257,104 - -0.9 2,257,104 - -1.9 2,257,104 - -0.8 2,257,104 - +0.3 2,257,104 - -3.1 2,257,104 - +0.2 2,257,136 - -2.2 2,257,136 - -1.5 2,257,136 - -0.5 2,257,255 + clpP MCAODC_27560 0.20 +1.5 2,257,268 - clpP MCAODC_27560 0.22 +1.5 2,257,487 - clpP MCAODC_27560 0.57 -2.0 2,257,487 - clpP MCAODC_27560 0.57 +0.6 2,257,523 - clpP MCAODC_27560 0.63 -0.5 2,257,533 + clpP MCAODC_27560 0.65 +1.1 2,257,644 - clpP MCAODC_27560 0.82 -0.7 2,257,654 - clpP MCAODC_27560 0.84 +2.1 2,257,799 - -1.1 2,257,799 - -1.9 2,257,799 - -0.5 2,257,816 - -0.6 2,257,823 - -0.1 2,257,854 - -1.8 2,257,864 + -0.9 2,257,986 - -1.1 2,258,262 + tig MCAODC_27565 0.20 +2.3 2,258,263 - tig MCAODC_27565 0.20 +2.5 2,258,263 - tig MCAODC_27565 0.20 +1.3 2,258,379 - tig MCAODC_27565 0.29 +1.0 2,258,484 - tig MCAODC_27565 0.37 +0.5 2,258,484 - tig MCAODC_27565 0.37 -0.9 2,258,613 - tig MCAODC_27565 0.47 +1.0
Or see this region's nucleotide sequence