Strain Fitness in Escherichia coli ECRC101 around MCAODC_23460

Experiment: WM_EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nt MCAODC_23460: MCAODC_23460 - ShiA, at 1,418,347 to 1,418,565 _23460 Position (kb) 1418 1419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1417.352 kb on + strandat 1417.601 kb on + strandat 1417.602 kb on - strandat 1417.657 kb on + strandat 1418.136 kb on + strandat 1418.162 kb on - strandat 1418.264 kb on - strandat 1418.276 kb on - strandat 1418.276 kb on - strandat 1418.276 kb on - strandat 1418.414 kb on - strand, within MCAODC_23460at 1418.414 kb on - strand, within MCAODC_23460at 1418.439 kb on - strand, within MCAODC_23460at 1418.963 kb on - strandat 1419.312 kb on - strandat 1419.404 kb on + strandat 1419.413 kb on - strandat 1419.524 kb on + strandat 1419.525 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
remove
1,417,352 + +0.7
1,417,601 + -1.2
1,417,602 - +0.5
1,417,657 + +0.4
1,418,136 + +0.2
1,418,162 - +0.9
1,418,264 - +0.7
1,418,276 - +0.2
1,418,276 - +1.3
1,418,276 - +1.8
1,418,414 - MCAODC_23460 0.31 -1.9
1,418,414 - MCAODC_23460 0.31 +1.0
1,418,439 - MCAODC_23460 0.42 +3.0
1,418,963 - -0.9
1,419,312 - +2.6
1,419,404 + -2.6
1,419,413 - +0.7
1,419,524 + -0.8
1,419,525 - -0.2

Or see this region's nucleotide sequence