Strain Fitness in Escherichia coli ECRC101 around MCAODC_22425

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22415 and MCAODC_22420 overlap by 4 nucleotidesMCAODC_22420 and MCAODC_22425 are separated by 5 nucleotidesMCAODC_22425 and MCAODC_22430 overlap by 8 nucleotidesMCAODC_22430 and MCAODC_22435 overlap by 11 nucleotidesMCAODC_22435 and MCAODC_22440 overlap by 8 nucleotides MCAODC_22415: MCAODC_22415 - DNA primase, at 1,243,024 to 1,244,424 _22415 MCAODC_22420: MCAODC_22420 - DUF4222 domain-containing protein, at 1,244,421 to 1,244,720 _22420 MCAODC_22425: MCAODC_22425 - hypothetical protein, at 1,244,726 to 1,244,959 _22425 MCAODC_22430: MCAODC_22430 - Putative prophage protein, at 1,244,952 to 1,245,416 _22430 MCAODC_22435: MCAODC_22435 - hypothetical protein, at 1,245,406 to 1,245,618 _22435 MCAODC_22440: MCAODC_22440 - host cell division inhibitor Icd-like protein, at 1,245,611 to 1,246,555 _22440 Position (kb) 1244 1245Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1243.775 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.793 kb on - strand, within MCAODC_22415at 1243.815 kb on - strand, within MCAODC_22415at 1243.903 kb on - strand, within MCAODC_22415at 1243.903 kb on - strand, within MCAODC_22415at 1243.904 kb on + strand, within MCAODC_22415at 1243.922 kb on + strand, within MCAODC_22415at 1243.922 kb on + strand, within MCAODC_22415at 1243.923 kb on - strand, within MCAODC_22415at 1243.923 kb on - strand, within MCAODC_22415at 1243.923 kb on - strand, within MCAODC_22415at 1243.924 kb on + strand, within MCAODC_22415at 1243.940 kb on - strand, within MCAODC_22415at 1243.951 kb on - strand, within MCAODC_22415at 1243.960 kb on - strand, within MCAODC_22415at 1244.137 kb on + strand, within MCAODC_22415at 1244.173 kb on - strand, within MCAODC_22415at 1244.176 kb on - strand, within MCAODC_22415at 1244.176 kb on - strand, within MCAODC_22415at 1244.204 kb on + strand, within MCAODC_22415at 1244.390 kb on + strandat 1244.504 kb on + strand, within MCAODC_22420at 1244.521 kb on - strand, within MCAODC_22420at 1244.569 kb on + strand, within MCAODC_22420at 1244.569 kb on + strand, within MCAODC_22420at 1244.596 kb on - strand, within MCAODC_22420at 1244.619 kb on - strand, within MCAODC_22420at 1244.987 kb on + strandat 1245.168 kb on - strand, within MCAODC_22430at 1245.219 kb on - strand, within MCAODC_22430at 1245.320 kb on + strand, within MCAODC_22430at 1245.320 kb on + strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.417 kb on - strandat 1245.441 kb on + strand, within MCAODC_22435at 1245.554 kb on - strand, within MCAODC_22435at 1245.592 kb on - strand, within MCAODC_22435at 1245.613 kb on - strandat 1245.776 kb on + strand, within MCAODC_22440at 1245.776 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.789 kb on - strand, within MCAODC_22440at 1245.789 kb on - strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.819 kb on - strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.824 kb on - strand, within MCAODC_22440at 1245.846 kb on + strand, within MCAODC_22440at 1245.883 kb on + strand, within MCAODC_22440at 1245.883 kb on + strand, within MCAODC_22440at 1245.884 kb on - strand, within MCAODC_22440

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,243,775 - MCAODC_22415 0.54 +0.9
1,243,793 - MCAODC_22415 0.55 +1.7
1,243,793 - MCAODC_22415 0.55 -1.9
1,243,793 - MCAODC_22415 0.55 -1.2
1,243,815 - MCAODC_22415 0.56 -2.0
1,243,903 - MCAODC_22415 0.63 +1.1
1,243,903 - MCAODC_22415 0.63 +2.9
1,243,904 + MCAODC_22415 0.63 +0.3
1,243,922 + MCAODC_22415 0.64 +2.7
1,243,922 + MCAODC_22415 0.64 +0.4
1,243,923 - MCAODC_22415 0.64 -2.2
1,243,923 - MCAODC_22415 0.64 +1.3
1,243,923 - MCAODC_22415 0.64 -2.4
1,243,924 + MCAODC_22415 0.64 +1.3
1,243,940 - MCAODC_22415 0.65 -2.2
1,243,951 - MCAODC_22415 0.66 -1.8
1,243,960 - MCAODC_22415 0.67 -0.2
1,244,137 + MCAODC_22415 0.79 -1.2
1,244,173 - MCAODC_22415 0.82 -0.8
1,244,176 - MCAODC_22415 0.82 -1.9
1,244,176 - MCAODC_22415 0.82 -2.6
1,244,204 + MCAODC_22415 0.84 +0.1
1,244,390 + -1.5
1,244,504 + MCAODC_22420 0.28 +0.3
1,244,521 - MCAODC_22420 0.33 -1.6
1,244,569 + MCAODC_22420 0.49 -1.5
1,244,569 + MCAODC_22420 0.49 +0.3
1,244,596 - MCAODC_22420 0.58 -0.2
1,244,619 - MCAODC_22420 0.66 +1.3
1,244,987 + +2.0
1,245,168 - MCAODC_22430 0.46 -0.0
1,245,219 - MCAODC_22430 0.57 -0.9
1,245,320 + MCAODC_22430 0.79 +1.3
1,245,320 + MCAODC_22430 0.79 +0.9
1,245,321 - MCAODC_22430 0.79 -1.4
1,245,321 - MCAODC_22430 0.79 +1.3
1,245,321 - MCAODC_22430 0.79 +0.4
1,245,321 - MCAODC_22430 0.79 -0.6
1,245,417 - -0.2
1,245,441 + MCAODC_22435 0.16 -0.4
1,245,554 - MCAODC_22435 0.69 +0.1
1,245,592 - MCAODC_22435 0.87 +0.6
1,245,613 - -0.3
1,245,776 + MCAODC_22440 0.17 -0.2
1,245,776 + MCAODC_22440 0.17 +0.9
1,245,788 + MCAODC_22440 0.19 -2.0
1,245,788 + MCAODC_22440 0.19 -0.1
1,245,788 + MCAODC_22440 0.19 -2.5
1,245,788 + MCAODC_22440 0.19 -0.4
1,245,788 + MCAODC_22440 0.19 -0.7
1,245,789 - MCAODC_22440 0.19 -0.3
1,245,789 - MCAODC_22440 0.19 +1.6
1,245,818 + MCAODC_22440 0.22 +1.5
1,245,818 + MCAODC_22440 0.22 +0.7
1,245,818 + MCAODC_22440 0.22 +1.9
1,245,819 - MCAODC_22440 0.22 +0.8
1,245,823 + MCAODC_22440 0.22 +0.3
1,245,823 + MCAODC_22440 0.22 +0.9
1,245,823 + MCAODC_22440 0.22 +1.5
1,245,823 + MCAODC_22440 0.22 +0.2
1,245,824 - MCAODC_22440 0.23 -0.2
1,245,846 + MCAODC_22440 0.25 -0.6
1,245,883 + MCAODC_22440 0.29 -1.4
1,245,883 + MCAODC_22440 0.29 -0.6
1,245,884 - MCAODC_22440 0.29 -1.1

Or see this region's nucleotide sequence