Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narK and MCAODC_21730 are separated by 94 nucleotides MCAODC_21730 and narX are separated by 25 nucleotides
MCAODC_21725: narK - nitrate transporter NarK, at 1,131,160 to 1,132,551
narK
MCAODC_21730: MCAODC_21730 - hypothetical protein, at 1,132,646 to 1,132,864
_21730
MCAODC_21735: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 1,132,890 to 1,134,686
narX
Position (kb) 1132
1133 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1131.675 kb on - strand, within narK at 1131.777 kb on + strand, within narK at 1131.777 kb on + strand, within narK at 1131.778 kb on - strand, within narK at 1131.920 kb on + strand, within narK at 1131.965 kb on - strand, within narK at 1131.986 kb on - strand, within narK at 1132.011 kb on + strand, within narK at 1132.269 kb on + strand, within narK at 1132.269 kb on + strand, within narK at 1132.269 kb on + strand, within narK at 1132.288 kb on + strand, within narK at 1132.291 kb on + strand, within narK at 1132.291 kb on + strand, within narK at 1132.326 kb on + strand, within narK at 1132.331 kb on - strand, within narK at 1132.331 kb on - strand, within narK at 1132.589 kb on - strand at 1132.641 kb on - strand at 1132.644 kb on + strand at 1132.644 kb on + strand at 1132.653 kb on + strand at 1132.653 kb on + strand at 1132.654 kb on - strand at 1132.657 kb on + strand at 1132.747 kb on + strand, within MCAODC_21730 at 1132.766 kb on - strand, within MCAODC_21730 at 1132.793 kb on - strand, within MCAODC_21730 at 1132.794 kb on + strand, within MCAODC_21730 at 1132.794 kb on + strand, within MCAODC_21730 at 1132.795 kb on - strand, within MCAODC_21730 at 1132.795 kb on - strand, within MCAODC_21730 at 1132.806 kb on + strand, within MCAODC_21730 at 1132.817 kb on - strand, within MCAODC_21730 at 1132.866 kb on + strand at 1132.887 kb on + strand at 1132.887 kb on + strand at 1132.887 kb on + strand at 1132.888 kb on - strand at 1132.895 kb on + strand at 1132.895 kb on + strand at 1132.940 kb on + strand at 1132.940 kb on + strand at 1132.940 kb on + strand at 1132.962 kb on - strand at 1133.107 kb on + strand, within narX at 1133.135 kb on + strand, within narX at 1133.302 kb on + strand, within narX at 1133.303 kb on - strand, within narX at 1133.375 kb on + strand, within narX at 1133.399 kb on + strand, within narX at 1133.402 kb on + strand, within narX at 1133.425 kb on + strand, within narX at 1133.480 kb on + strand, within narX at 1133.543 kb on + strand, within narX at 1133.543 kb on + strand, within narX at 1133.543 kb on + strand, within narX at 1133.575 kb on + strand, within narX at 1133.701 kb on + strand, within narX at 1133.714 kb on - strand, within narX at 1133.732 kb on - strand, within narX at 1133.732 kb on - strand, within narX at 1133.754 kb on + strand, within narX at 1133.804 kb on + strand, within narX
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 1,131,675 - narK MCAODC_21725 0.37 +0.5 1,131,777 + narK MCAODC_21725 0.44 -1.3 1,131,777 + narK MCAODC_21725 0.44 +0.5 1,131,778 - narK MCAODC_21725 0.44 +0.1 1,131,920 + narK MCAODC_21725 0.55 -0.1 1,131,965 - narK MCAODC_21725 0.58 +0.7 1,131,986 - narK MCAODC_21725 0.59 +0.3 1,132,011 + narK MCAODC_21725 0.61 +1.3 1,132,269 + narK MCAODC_21725 0.80 -0.1 1,132,269 + narK MCAODC_21725 0.80 +1.0 1,132,269 + narK MCAODC_21725 0.80 +3.3 1,132,288 + narK MCAODC_21725 0.81 -0.6 1,132,291 + narK MCAODC_21725 0.81 -0.9 1,132,291 + narK MCAODC_21725 0.81 -0.2 1,132,326 + narK MCAODC_21725 0.84 -1.0 1,132,331 - narK MCAODC_21725 0.84 -0.6 1,132,331 - narK MCAODC_21725 0.84 -0.5 1,132,589 - +0.9 1,132,641 - -1.4 1,132,644 + +0.6 1,132,644 + -0.3 1,132,653 + -1.0 1,132,653 + +0.5 1,132,654 - -0.2 1,132,657 + +1.4 1,132,747 + MCAODC_21730 0.46 -0.2 1,132,766 - MCAODC_21730 0.55 -1.6 1,132,793 - MCAODC_21730 0.67 -1.5 1,132,794 + MCAODC_21730 0.68 -0.6 1,132,794 + MCAODC_21730 0.68 -1.1 1,132,795 - MCAODC_21730 0.68 +0.9 1,132,795 - MCAODC_21730 0.68 -1.0 1,132,806 + MCAODC_21730 0.73 -0.8 1,132,817 - MCAODC_21730 0.78 -1.3 1,132,866 + -1.0 1,132,887 + -1.1 1,132,887 + +0.4 1,132,887 + -0.3 1,132,888 - -0.6 1,132,895 + -0.1 1,132,895 + -2.6 1,132,940 + -0.1 1,132,940 + +1.5 1,132,940 + +2.1 1,132,962 - +0.6 1,133,107 + narX MCAODC_21735 0.12 -0.8 1,133,135 + narX MCAODC_21735 0.14 +1.4 1,133,302 + narX MCAODC_21735 0.23 -1.1 1,133,303 - narX MCAODC_21735 0.23 +0.4 1,133,375 + narX MCAODC_21735 0.27 +1.9 1,133,399 + narX MCAODC_21735 0.28 +2.6 1,133,402 + narX MCAODC_21735 0.28 -0.5 1,133,425 + narX MCAODC_21735 0.30 -0.5 1,133,480 + narX MCAODC_21735 0.33 -1.0 1,133,543 + narX MCAODC_21735 0.36 +0.9 1,133,543 + narX MCAODC_21735 0.36 +0.2 1,133,543 + narX MCAODC_21735 0.36 -0.9 1,133,575 + narX MCAODC_21735 0.38 +0.6 1,133,701 + narX MCAODC_21735 0.45 -0.1 1,133,714 - narX MCAODC_21735 0.46 +1.2 1,133,732 - narX MCAODC_21735 0.47 +0.1 1,133,732 - narX MCAODC_21735 0.47 +0.9 1,133,754 + narX MCAODC_21735 0.48 +1.9 1,133,804 + narX MCAODC_21735 0.51 -1.2
Or see this region's nucleotide sequence