Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtA and cobT are separated by 61 nucleotides cobT and cobS are separated by 11 nucleotides cobS and cobU overlap by 4 nucleotides
MCAODC_20250: ldtA - L,D-transpeptidase, at 861,065 to 862,000
ldtA
MCAODC_20255: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 862,062 to 863,141
cobT
MCAODC_20260: cobS - adenosylcobinamide-GDP ribazoletransferase, at 863,153 to 863,896
cobS
MCAODC_20265: cobU - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 863,893 to 864,435
cobU
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 861.091 kb on + strand at 861.091 kb on + strand at 861.166 kb on + strand, within ldtA at 861.288 kb on + strand, within ldtA at 861.289 kb on - strand, within ldtA at 861.326 kb on + strand, within ldtA at 861.435 kb on + strand, within ldtA at 861.437 kb on + strand, within ldtA at 861.438 kb on - strand, within ldtA at 861.438 kb on - strand, within ldtA at 861.438 kb on - strand, within ldtA at 861.451 kb on - strand, within ldtA at 861.653 kb on - strand, within ldtA at 861.653 kb on - strand, within ldtA at 861.655 kb on + strand, within ldtA at 861.656 kb on - strand, within ldtA at 861.675 kb on + strand, within ldtA at 861.811 kb on + strand, within ldtA at 861.811 kb on + strand, within ldtA at 861.812 kb on - strand, within ldtA at 861.878 kb on + strand, within ldtA at 861.883 kb on + strand, within ldtA at 861.884 kb on - strand, within ldtA at 861.900 kb on - strand, within ldtA at 861.921 kb on - strand at 861.921 kb on - strand at 861.943 kb on + strand at 861.944 kb on - strand at 861.986 kb on + strand at 862.012 kb on - strand at 862.033 kb on - strand at 862.037 kb on - strand at 862.064 kb on - strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.203 kb on - strand, within cobT at 862.476 kb on - strand, within cobT at 862.581 kb on + strand, within cobT at 862.624 kb on - strand, within cobT at 862.665 kb on - strand, within cobT at 862.671 kb on + strand, within cobT at 862.671 kb on + strand, within cobT at 862.671 kb on + strand, within cobT at 862.671 kb on + strand, within cobT at 862.672 kb on - strand, within cobT at 862.672 kb on - strand, within cobT at 862.672 kb on - strand, within cobT at 862.672 kb on - strand, within cobT at 862.672 kb on - strand, within cobT at 862.672 kb on - strand, within cobT at 862.776 kb on - strand, within cobT at 862.794 kb on - strand, within cobT at 862.807 kb on - strand, within cobT at 862.817 kb on + strand, within cobT at 862.946 kb on + strand, within cobT at 863.011 kb on - strand, within cobT at 863.011 kb on - strand, within cobT at 863.115 kb on - strand at 863.285 kb on - strand, within cobS at 863.315 kb on + strand, within cobS at 863.315 kb on + strand, within cobS at 863.316 kb on - strand, within cobS at 863.337 kb on - strand, within cobS at 863.412 kb on + strand, within cobS at 863.424 kb on + strand, within cobS at 863.424 kb on + strand, within cobS at 863.424 kb on + strand, within cobS at 863.425 kb on - strand, within cobS at 863.425 kb on - strand, within cobS at 863.535 kb on - strand, within cobS at 863.571 kb on - strand, within cobS at 863.579 kb on - strand, within cobS at 863.612 kb on - strand, within cobS at 863.624 kb on + strand, within cobS at 863.638 kb on + strand, within cobS at 863.792 kb on - strand, within cobS at 863.795 kb on - strand, within cobS at 863.809 kb on - strand, within cobS at 863.933 kb on - strand at 863.933 kb on - strand at 863.980 kb on - strand, within cobU at 864.043 kb on + strand, within cobU at 864.044 kb on - strand, within cobU at 864.047 kb on - strand, within cobU at 864.047 kb on - strand, within cobU at 864.047 kb on - strand, within cobU at 864.103 kb on - strand, within cobU
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 861,091 + -0.9 861,091 + -0.3 861,166 + ldtA MCAODC_20250 0.11 -0.8 861,288 + ldtA MCAODC_20250 0.24 -1.3 861,289 - ldtA MCAODC_20250 0.24 -0.6 861,326 + ldtA MCAODC_20250 0.28 +1.7 861,435 + ldtA MCAODC_20250 0.40 -0.6 861,437 + ldtA MCAODC_20250 0.40 -0.7 861,438 - ldtA MCAODC_20250 0.40 +0.5 861,438 - ldtA MCAODC_20250 0.40 +1.2 861,438 - ldtA MCAODC_20250 0.40 -0.6 861,451 - ldtA MCAODC_20250 0.41 +2.4 861,653 - ldtA MCAODC_20250 0.63 +0.8 861,653 - ldtA MCAODC_20250 0.63 +1.0 861,655 + ldtA MCAODC_20250 0.63 +1.0 861,656 - ldtA MCAODC_20250 0.63 +0.4 861,675 + ldtA MCAODC_20250 0.65 +0.9 861,811 + ldtA MCAODC_20250 0.80 +0.5 861,811 + ldtA MCAODC_20250 0.80 +2.4 861,812 - ldtA MCAODC_20250 0.80 -0.2 861,878 + ldtA MCAODC_20250 0.87 -0.3 861,883 + ldtA MCAODC_20250 0.87 +1.4 861,884 - ldtA MCAODC_20250 0.88 +1.4 861,900 - ldtA MCAODC_20250 0.89 +3.0 861,921 - +1.1 861,921 - +1.8 861,943 + +1.2 861,944 - +2.2 861,986 + +1.1 862,012 - -1.7 862,033 - -0.7 862,037 - -0.1 862,064 - -0.8 862,136 - -0.9 862,136 - -1.5 862,136 - -0.0 862,203 - cobT MCAODC_20255 0.13 -1.4 862,476 - cobT MCAODC_20255 0.38 +0.1 862,581 + cobT MCAODC_20255 0.48 -1.9 862,624 - cobT MCAODC_20255 0.52 -0.8 862,665 - cobT MCAODC_20255 0.56 -0.8 862,671 + cobT MCAODC_20255 0.56 +0.7 862,671 + cobT MCAODC_20255 0.56 +0.7 862,671 + cobT MCAODC_20255 0.56 +0.2 862,671 + cobT MCAODC_20255 0.56 -0.2 862,672 - cobT MCAODC_20255 0.56 +1.0 862,672 - cobT MCAODC_20255 0.56 +0.5 862,672 - cobT MCAODC_20255 0.56 -0.7 862,672 - cobT MCAODC_20255 0.56 +1.4 862,672 - cobT MCAODC_20255 0.56 -1.7 862,672 - cobT MCAODC_20255 0.56 -1.3 862,776 - cobT MCAODC_20255 0.66 +1.0 862,794 - cobT MCAODC_20255 0.68 +0.4 862,807 - cobT MCAODC_20255 0.69 -1.2 862,817 + cobT MCAODC_20255 0.70 -0.9 862,946 + cobT MCAODC_20255 0.82 -1.0 863,011 - cobT MCAODC_20255 0.88 +0.2 863,011 - cobT MCAODC_20255 0.88 +1.1 863,115 - +1.5 863,285 - cobS MCAODC_20260 0.18 -1.4 863,315 + cobS MCAODC_20260 0.22 -0.4 863,315 + cobS MCAODC_20260 0.22 -1.7 863,316 - cobS MCAODC_20260 0.22 +0.4 863,337 - cobS MCAODC_20260 0.25 -0.3 863,412 + cobS MCAODC_20260 0.35 -1.2 863,424 + cobS MCAODC_20260 0.36 +1.1 863,424 + cobS MCAODC_20260 0.36 -1.3 863,424 + cobS MCAODC_20260 0.36 +0.3 863,425 - cobS MCAODC_20260 0.37 +1.3 863,425 - cobS MCAODC_20260 0.37 +1.2 863,535 - cobS MCAODC_20260 0.51 -1.1 863,571 - cobS MCAODC_20260 0.56 +1.3 863,579 - cobS MCAODC_20260 0.57 -1.7 863,612 - cobS MCAODC_20260 0.62 +0.1 863,624 + cobS MCAODC_20260 0.63 -0.3 863,638 + cobS MCAODC_20260 0.65 -1.4 863,792 - cobS MCAODC_20260 0.86 -0.5 863,795 - cobS MCAODC_20260 0.86 +1.6 863,809 - cobS MCAODC_20260 0.88 +1.6 863,933 - -1.0 863,933 - -0.7 863,980 - cobU MCAODC_20265 0.16 +1.0 864,043 + cobU MCAODC_20265 0.28 -0.6 864,044 - cobU MCAODC_20265 0.28 -0.9 864,047 - cobU MCAODC_20265 0.28 -2.3 864,047 - cobU MCAODC_20265 0.28 +0.3 864,047 - cobU MCAODC_20265 0.28 +0.6 864,103 - cobU MCAODC_20265 0.39 -1.4
Or see this region's nucleotide sequence