Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliM and fliN overlap by 4 nucleotides fliN and fliO are separated by 2 nucleotides fliO and fliP overlap by 1 nucleotides
MCAODC_19715: fliM - flagellar motor switch protein FliM, at 773,842 to 774,846
fliM
MCAODC_19720: fliN - flagellar motor switch protein FliN, at 774,843 to 775,256
fliN
MCAODC_19725: fliO - flagellar type III secretion system protein FliO, at 775,259 to 775,624
fliO
MCAODC_19730: fliP - flagellar type III secretion system pore protein FliP, at 775,624 to 776,361
fliP
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 773.853 kb on + strand at 773.853 kb on + strand at 774.066 kb on + strand, within fliM at 774.077 kb on + strand, within fliM at 774.077 kb on + strand, within fliM at 774.411 kb on + strand, within fliM at 774.490 kb on - strand, within fliM at 774.650 kb on + strand, within fliM at 774.698 kb on + strand, within fliM at 774.778 kb on + strand at 774.778 kb on + strand at 774.778 kb on + strand at 774.857 kb on + strand at 775.152 kb on + strand, within fliN at 775.156 kb on + strand, within fliN at 775.194 kb on + strand, within fliN at 775.264 kb on + strand at 775.273 kb on + strand at 775.273 kb on + strand at 775.273 kb on + strand at 775.274 kb on - strand at 775.274 kb on - strand at 775.563 kb on + strand, within fliO at 775.603 kb on + strand at 775.603 kb on + strand at 775.668 kb on + strand at 775.879 kb on - strand, within fliP at 775.879 kb on - strand, within fliP at 775.920 kb on + strand, within fliP at 775.923 kb on + strand, within fliP at 775.986 kb on - strand, within fliP at 776.222 kb on + strand, within fliP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 773,853 + +2.0 773,853 + +0.3 774,066 + fliM MCAODC_19715 0.22 -0.6 774,077 + fliM MCAODC_19715 0.23 -1.6 774,077 + fliM MCAODC_19715 0.23 -0.3 774,411 + fliM MCAODC_19715 0.57 -0.3 774,490 - fliM MCAODC_19715 0.64 -2.6 774,650 + fliM MCAODC_19715 0.80 -1.5 774,698 + fliM MCAODC_19715 0.85 +0.0 774,778 + +0.8 774,778 + -0.5 774,778 + +0.2 774,857 + +0.2 775,152 + fliN MCAODC_19720 0.75 -1.7 775,156 + fliN MCAODC_19720 0.76 -1.3 775,194 + fliN MCAODC_19720 0.85 -2.3 775,264 + -0.6 775,273 + -0.2 775,273 + +0.4 775,273 + -0.2 775,274 - +1.7 775,274 - +1.3 775,563 + fliO MCAODC_19725 0.83 +0.4 775,603 + -0.7 775,603 + -0.6 775,668 + -1.3 775,879 - fliP MCAODC_19730 0.35 +0.0 775,879 - fliP MCAODC_19730 0.35 -1.4 775,920 + fliP MCAODC_19730 0.40 -2.0 775,923 + fliP MCAODC_19730 0.41 +0.6 775,986 - fliP MCAODC_19730 0.49 -0.8 776,222 + fliP MCAODC_19730 0.81 +1.1
Or see this region's nucleotide sequence