Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcyD and tcyJ are separated by 104 nucleotides tcyJ and fliZ are separated by 30 nucleotides fliZ and fliA are separated by 45 nucleotides
MCAODC_19595: dcyD - D-cysteine desulfhydrase, at 750,035 to 751,021
dcyD
MCAODC_19600: tcyJ - cystine ABC transporter substrate-binding protein, at 751,126 to 751,983
tcyJ
MCAODC_19605: fliZ - flagella biosynthesis regulatory protein FliZ, at 752,014 to 752,565
fliZ
MCAODC_19610: fliA - RNA polymerase sigma factor FliA, at 752,611 to 753,330
fliA
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.128 kb on - strand at 750.162 kb on + strand, within dcyD at 750.241 kb on - strand, within dcyD at 750.241 kb on - strand, within dcyD at 750.255 kb on + strand, within dcyD at 750.256 kb on - strand, within dcyD at 750.320 kb on + strand, within dcyD at 750.321 kb on - strand, within dcyD at 750.321 kb on - strand, within dcyD at 750.321 kb on - strand, within dcyD at 750.321 kb on - strand, within dcyD at 750.516 kb on + strand, within dcyD at 750.516 kb on + strand, within dcyD at 750.538 kb on + strand, within dcyD at 750.539 kb on - strand, within dcyD at 750.562 kb on - strand, within dcyD at 750.689 kb on + strand, within dcyD at 750.693 kb on + strand, within dcyD at 750.715 kb on + strand, within dcyD at 750.809 kb on - strand, within dcyD at 750.862 kb on + strand, within dcyD at 750.863 kb on - strand, within dcyD at 750.863 kb on - strand, within dcyD at 750.863 kb on - strand, within dcyD at 750.867 kb on - strand, within dcyD at 750.929 kb on + strand at 750.933 kb on + strand at 751.009 kb on + strand at 751.022 kb on - strand at 751.296 kb on + strand, within tcyJ at 751.297 kb on - strand, within tcyJ at 751.357 kb on - strand, within tcyJ at 751.400 kb on + strand, within tcyJ at 751.401 kb on - strand, within tcyJ at 751.404 kb on + strand, within tcyJ at 751.404 kb on + strand, within tcyJ at 751.405 kb on - strand, within tcyJ at 751.405 kb on - strand, within tcyJ at 751.449 kb on - strand, within tcyJ at 751.504 kb on - strand, within tcyJ at 751.504 kb on - strand, within tcyJ at 751.556 kb on + strand, within tcyJ at 751.612 kb on - strand, within tcyJ at 751.626 kb on + strand, within tcyJ at 751.627 kb on - strand, within tcyJ at 751.633 kb on - strand, within tcyJ at 751.654 kb on - strand, within tcyJ at 751.780 kb on - strand, within tcyJ at 751.946 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 752.006 kb on - strand at 752.011 kb on + strand at 752.016 kb on - strand at 752.016 kb on - strand at 752.018 kb on + strand at 752.018 kb on + strand at 752.019 kb on - strand at 752.020 kb on + strand at 752.021 kb on - strand at 752.021 kb on - strand at 752.022 kb on + strand at 752.022 kb on + strand at 752.023 kb on - strand at 752.082 kb on - strand, within fliZ at 752.090 kb on + strand, within fliZ at 752.204 kb on - strand, within fliZ at 752.237 kb on + strand, within fliZ at 752.238 kb on - strand, within fliZ at 752.238 kb on - strand, within fliZ at 752.250 kb on + strand, within fliZ at 752.250 kb on + strand, within fliZ at 752.290 kb on - strand, within fliZ at 752.333 kb on - strand, within fliZ at 752.460 kb on + strand, within fliZ at 752.520 kb on + strand at 752.521 kb on - strand at 752.566 kb on + strand at 752.566 kb on + strand at 752.613 kb on - strand at 752.613 kb on - strand at 752.613 kb on - strand at 752.615 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.733 kb on - strand, within fliA at 752.744 kb on - strand, within fliA at 752.802 kb on + strand, within fliA at 752.812 kb on + strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.821 kb on + strand, within fliA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 750,128 - -1.6 750,162 + dcyD MCAODC_19595 0.13 +0.4 750,241 - dcyD MCAODC_19595 0.21 +0.8 750,241 - dcyD MCAODC_19595 0.21 +1.9 750,255 + dcyD MCAODC_19595 0.22 -0.6 750,256 - dcyD MCAODC_19595 0.22 -1.1 750,320 + dcyD MCAODC_19595 0.29 +0.9 750,321 - dcyD MCAODC_19595 0.29 +0.5 750,321 - dcyD MCAODC_19595 0.29 +1.4 750,321 - dcyD MCAODC_19595 0.29 +1.5 750,321 - dcyD MCAODC_19595 0.29 -0.5 750,516 + dcyD MCAODC_19595 0.49 +0.0 750,516 + dcyD MCAODC_19595 0.49 +0.4 750,538 + dcyD MCAODC_19595 0.51 -0.4 750,539 - dcyD MCAODC_19595 0.51 +0.3 750,562 - dcyD MCAODC_19595 0.53 +0.0 750,689 + dcyD MCAODC_19595 0.66 +0.6 750,693 + dcyD MCAODC_19595 0.67 -0.3 750,715 + dcyD MCAODC_19595 0.69 +0.9 750,809 - dcyD MCAODC_19595 0.78 +0.5 750,862 + dcyD MCAODC_19595 0.84 +0.4 750,863 - dcyD MCAODC_19595 0.84 +0.6 750,863 - dcyD MCAODC_19595 0.84 +0.2 750,863 - dcyD MCAODC_19595 0.84 -0.8 750,867 - dcyD MCAODC_19595 0.84 +0.5 750,929 + +1.8 750,933 + -1.4 751,009 + +0.9 751,022 - -0.1 751,296 + tcyJ MCAODC_19600 0.20 +0.1 751,297 - tcyJ MCAODC_19600 0.20 -0.2 751,357 - tcyJ MCAODC_19600 0.27 -0.5 751,400 + tcyJ MCAODC_19600 0.32 +0.2 751,401 - tcyJ MCAODC_19600 0.32 +0.3 751,404 + tcyJ MCAODC_19600 0.32 +0.6 751,404 + tcyJ MCAODC_19600 0.32 +2.1 751,405 - tcyJ MCAODC_19600 0.33 -0.4 751,405 - tcyJ MCAODC_19600 0.33 +0.7 751,449 - tcyJ MCAODC_19600 0.38 +1.2 751,504 - tcyJ MCAODC_19600 0.44 -1.0 751,504 - tcyJ MCAODC_19600 0.44 +0.7 751,556 + tcyJ MCAODC_19600 0.50 +1.9 751,612 - tcyJ MCAODC_19600 0.57 +1.6 751,626 + tcyJ MCAODC_19600 0.58 +1.1 751,627 - tcyJ MCAODC_19600 0.58 +0.6 751,633 - tcyJ MCAODC_19600 0.59 -0.6 751,654 - tcyJ MCAODC_19600 0.62 -0.8 751,780 - tcyJ MCAODC_19600 0.76 -0.4 751,946 - -0.9 751,963 - +0.6 751,963 - -0.2 751,963 - +1.9 751,963 - -0.4 752,006 - +0.9 752,011 + +0.3 752,016 - +0.4 752,016 - -1.5 752,018 + -1.1 752,018 + -1.0 752,019 - -0.6 752,020 + -1.1 752,021 - -2.9 752,021 - +0.5 752,022 + +2.4 752,022 + +1.2 752,023 - +0.2 752,082 - fliZ MCAODC_19605 0.12 -0.6 752,090 + fliZ MCAODC_19605 0.14 -0.6 752,204 - fliZ MCAODC_19605 0.34 +0.9 752,237 + fliZ MCAODC_19605 0.40 -0.9 752,238 - fliZ MCAODC_19605 0.41 +0.2 752,238 - fliZ MCAODC_19605 0.41 +1.8 752,250 + fliZ MCAODC_19605 0.43 +0.3 752,250 + fliZ MCAODC_19605 0.43 -0.9 752,290 - fliZ MCAODC_19605 0.50 +0.9 752,333 - fliZ MCAODC_19605 0.58 -0.3 752,460 + fliZ MCAODC_19605 0.81 +0.4 752,520 + -0.2 752,521 - +1.5 752,566 + +0.0 752,566 + -0.8 752,613 - -0.6 752,613 - -2.2 752,613 - +1.3 752,615 - -0.0 752,660 - +0.0 752,660 - -0.7 752,660 - -1.4 752,660 - -1.4 752,660 - -0.0 752,733 - fliA MCAODC_19610 0.17 -1.5 752,744 - fliA MCAODC_19610 0.18 -0.5 752,802 + fliA MCAODC_19610 0.27 -1.0 752,812 + fliA MCAODC_19610 0.28 -0.6 752,813 - fliA MCAODC_19610 0.28 +0.7 752,813 - fliA MCAODC_19610 0.28 +0.1 752,813 - fliA MCAODC_19610 0.28 -0.3 752,813 - fliA MCAODC_19610 0.28 -0.6 752,813 - fliA MCAODC_19610 0.28 -1.0 752,821 + fliA MCAODC_19610 0.29 -1.3
Or see this region's nucleotide sequence