Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Leu_trna and Cys_trna are separated by 12 nucleotides Cys_trna and Gly_trna are separated by 53 nucleotides Gly_trna and pgsA are separated by 151 nucleotides pgsA and uvrC are separated by 56 nucleotides
MCAODC_19545: Leu_trna - tRNA-Leu(taa), at 743,357 to 743,443
_trna
MCAODC_19550: Cys_trna - tRNA-Cys(gca), at 743,456 to 743,529
_trna
MCAODC_19555: Gly_trna - tRNA-Gly(gcc), at 743,583 to 743,658
_trna
MCAODC_19560: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 743,810 to 744,358
pgsA
MCAODC_19565: uvrC - excinuclease ABC subunit UvrC, at 744,415 to 746,247
uvrC
Position (kb) 743
744
745 Strain fitness (log2 ratio) -2
-1
0
1 at 742.835 kb on - strand at 742.913 kb on + strand at 743.225 kb on + strand at 744.502 kb on + strand at 744.524 kb on + strand at 744.651 kb on + strand, within uvrC at 744.856 kb on - strand, within uvrC at 744.877 kb on - strand, within uvrC at 744.877 kb on - strand, within uvrC at 744.895 kb on - strand, within uvrC at 744.963 kb on + strand, within uvrC at 744.964 kb on - strand, within uvrC at 744.965 kb on + strand, within uvrC at 745.041 kb on + strand, within uvrC at 745.107 kb on + strand, within uvrC at 745.107 kb on + strand, within uvrC at 745.108 kb on - strand, within uvrC at 745.224 kb on + strand, within uvrC at 745.225 kb on - strand, within uvrC at 745.273 kb on - strand, within uvrC at 745.278 kb on + strand, within uvrC at 745.279 kb on - strand, within uvrC at 745.337 kb on + strand, within uvrC at 745.348 kb on + strand, within uvrC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 742,835 - -0.8 742,913 + +0.3 743,225 + -0.0 744,502 + +1.2 744,524 + +0.6 744,651 + uvrC MCAODC_19565 0.13 -0.1 744,856 - uvrC MCAODC_19565 0.24 +0.1 744,877 - uvrC MCAODC_19565 0.25 -0.7 744,877 - uvrC MCAODC_19565 0.25 +1.5 744,895 - uvrC MCAODC_19565 0.26 -2.1 744,963 + uvrC MCAODC_19565 0.30 +1.2 744,964 - uvrC MCAODC_19565 0.30 +0.9 744,965 + uvrC MCAODC_19565 0.30 -0.9 745,041 + uvrC MCAODC_19565 0.34 -0.3 745,107 + uvrC MCAODC_19565 0.38 +0.2 745,107 + uvrC MCAODC_19565 0.38 -0.5 745,108 - uvrC MCAODC_19565 0.38 +0.3 745,224 + uvrC MCAODC_19565 0.44 -0.3 745,225 - uvrC MCAODC_19565 0.44 +0.3 745,273 - uvrC MCAODC_19565 0.47 -2.0 745,278 + uvrC MCAODC_19565 0.47 -0.2 745,279 - uvrC MCAODC_19565 0.47 +1.6 745,337 + uvrC MCAODC_19565 0.50 -0.4 745,348 + uvrC MCAODC_19565 0.51 +0.1
Or see this region's nucleotide sequence