Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt htpX and prc are separated by 191 nucleotides prc and proQ are separated by 19 nucleotides proQ and msrC are separated by 96 nucleotides
MCAODC_18935: htpX - protease HtpX, at 642,793 to 643,674
htpX
MCAODC_18940: prc - carboxy terminal-processing peptidase, at 643,866 to 645,914
prc
MCAODC_18945: proQ - RNA chaperone ProQ, at 645,934 to 646,632
proQ
MCAODC_18950: msrC - L-methionine (R)-S-oxide reductase, at 646,729 to 647,280
msrC
Position (kb) 643
644
645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 642.930 kb on - strand, within htpX at 643.092 kb on - strand, within htpX at 643.092 kb on - strand, within htpX at 643.379 kb on + strand, within htpX at 643.380 kb on - strand, within htpX at 643.380 kb on - strand, within htpX at 643.430 kb on - strand, within htpX at 643.430 kb on - strand, within htpX at 643.435 kb on - strand, within htpX at 643.675 kb on - strand at 643.766 kb on - strand at 643.766 kb on - strand at 643.766 kb on - strand at 643.810 kb on + strand at 643.810 kb on + strand at 643.864 kb on + strand at 643.952 kb on - strand at 643.981 kb on - strand at 644.124 kb on - strand, within prc at 644.124 kb on - strand, within prc at 644.124 kb on - strand, within prc at 644.190 kb on - strand, within prc at 644.190 kb on - strand, within prc at 644.190 kb on - strand, within prc at 644.279 kb on + strand, within prc at 644.351 kb on + strand, within prc at 644.352 kb on - strand, within prc at 644.398 kb on + strand, within prc at 644.434 kb on - strand, within prc at 644.451 kb on - strand, within prc at 644.451 kb on - strand, within prc at 644.524 kb on + strand, within prc at 644.603 kb on - strand, within prc at 644.652 kb on - strand, within prc at 644.670 kb on - strand, within prc at 644.670 kb on - strand, within prc at 644.819 kb on - strand, within prc at 644.923 kb on - strand, within prc at 644.923 kb on - strand, within prc at 644.923 kb on - strand, within prc at 645.090 kb on - strand, within prc at 645.096 kb on - strand, within prc at 645.174 kb on - strand, within prc at 645.232 kb on + strand, within prc at 645.233 kb on - strand, within prc at 645.391 kb on - strand, within prc at 645.411 kb on - strand, within prc at 645.476 kb on + strand, within prc at 645.476 kb on + strand, within prc at 645.477 kb on - strand, within prc at 645.477 kb on - strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.478 kb on + strand, within prc at 645.479 kb on - strand, within prc at 645.479 kb on - strand, within prc at 645.530 kb on - strand, within prc at 645.811 kb on - strand at 645.840 kb on - strand at 645.847 kb on - strand at 645.886 kb on - strand at 646.019 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.346 kb on - strand, within proQ at 646.443 kb on - strand, within proQ at 646.443 kb on - strand, within proQ at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.646 kb on + strand at 646.657 kb on + strand at 646.658 kb on - strand at 646.691 kb on - strand at 646.692 kb on + strand at 646.693 kb on - strand at 646.693 kb on - strand at 646.714 kb on + strand at 646.761 kb on - strand at 646.808 kb on - strand, within msrC at 646.848 kb on + strand, within msrC at 646.852 kb on - strand, within msrC at 646.852 kb on - strand, within msrC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 642,930 - htpX MCAODC_18935 0.16 -0.4 643,092 - htpX MCAODC_18935 0.34 -0.4 643,092 - htpX MCAODC_18935 0.34 -0.6 643,379 + htpX MCAODC_18935 0.66 -0.0 643,380 - htpX MCAODC_18935 0.67 -0.8 643,380 - htpX MCAODC_18935 0.67 +1.7 643,430 - htpX MCAODC_18935 0.72 +0.3 643,430 - htpX MCAODC_18935 0.72 +0.4 643,435 - htpX MCAODC_18935 0.73 -0.8 643,675 - -0.9 643,766 - +0.1 643,766 - -0.2 643,766 - -0.4 643,810 + -2.7 643,810 + -0.8 643,864 + +1.4 643,952 - -1.4 643,981 - -2.9 644,124 - prc MCAODC_18940 0.13 -2.7 644,124 - prc MCAODC_18940 0.13 -0.5 644,124 - prc MCAODC_18940 0.13 -0.2 644,190 - prc MCAODC_18940 0.16 -0.4 644,190 - prc MCAODC_18940 0.16 -1.8 644,190 - prc MCAODC_18940 0.16 -2.3 644,279 + prc MCAODC_18940 0.20 +0.2 644,351 + prc MCAODC_18940 0.24 +0.1 644,352 - prc MCAODC_18940 0.24 -0.3 644,398 + prc MCAODC_18940 0.26 -0.8 644,434 - prc MCAODC_18940 0.28 +0.4 644,451 - prc MCAODC_18940 0.29 -2.8 644,451 - prc MCAODC_18940 0.29 -1.1 644,524 + prc MCAODC_18940 0.32 +0.9 644,603 - prc MCAODC_18940 0.36 +0.1 644,652 - prc MCAODC_18940 0.38 -2.1 644,670 - prc MCAODC_18940 0.39 -1.9 644,670 - prc MCAODC_18940 0.39 -2.4 644,819 - prc MCAODC_18940 0.47 -0.1 644,923 - prc MCAODC_18940 0.52 -1.0 644,923 - prc MCAODC_18940 0.52 -1.2 644,923 - prc MCAODC_18940 0.52 -1.5 645,090 - prc MCAODC_18940 0.60 -2.7 645,096 - prc MCAODC_18940 0.60 -2.3 645,174 - prc MCAODC_18940 0.64 -1.4 645,232 + prc MCAODC_18940 0.67 -1.4 645,233 - prc MCAODC_18940 0.67 -0.8 645,391 - prc MCAODC_18940 0.74 -1.6 645,411 - prc MCAODC_18940 0.75 -0.8 645,476 + prc MCAODC_18940 0.79 -0.5 645,476 + prc MCAODC_18940 0.79 -0.1 645,477 - prc MCAODC_18940 0.79 -0.9 645,477 - prc MCAODC_18940 0.79 -0.7 645,478 + prc MCAODC_18940 0.79 -0.1 645,478 + prc MCAODC_18940 0.79 +0.4 645,478 + prc MCAODC_18940 0.79 -1.6 645,478 + prc MCAODC_18940 0.79 -0.1 645,479 - prc MCAODC_18940 0.79 -1.0 645,479 - prc MCAODC_18940 0.79 -0.9 645,530 - prc MCAODC_18940 0.81 -3.2 645,811 - -3.0 645,840 - -0.9 645,847 - -1.6 645,886 - -1.7 646,019 - proQ MCAODC_18945 0.12 -1.1 646,346 - proQ MCAODC_18945 0.59 -0.4 646,346 - proQ MCAODC_18945 0.59 -1.8 646,346 - proQ MCAODC_18945 0.59 -2.8 646,443 - proQ MCAODC_18945 0.73 -1.5 646,443 - proQ MCAODC_18945 0.73 -3.8 646,618 - +1.9 646,618 - +1.4 646,618 - -0.1 646,646 + -0.2 646,657 + -1.8 646,658 - -0.6 646,691 - -0.4 646,692 + +0.1 646,693 - -1.5 646,693 - -0.5 646,714 + -1.2 646,761 - -0.2 646,808 - msrC MCAODC_18950 0.14 +1.4 646,848 + msrC MCAODC_18950 0.22 +0.2 646,852 - msrC MCAODC_18950 0.22 +1.4 646,852 - msrC MCAODC_18950 0.22 +1.5
Or see this region's nucleotide sequence