Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaL and nimR overlap by 44 nucleotides nimR and nimT are separated by 99 nucleotides nimT and yeaO are separated by 54 nucleotides yeaO and yoaF are separated by 21 nucleotides yoaF and dgcP are separated by 182 nucleotides
MCAODC_18725: yeaL - UPF0756 membrane protein CKO_01811, at 605,225 to 605,671
yeaL
MCAODC_18730: nimR - DNA-binding transcriptional regulator NimR, at 605,628 to 606,446
nimR
MCAODC_18735: nimT - 2-nitroimidazole transporter, at 606,546 to 607,727
nimT
MCAODC_18740: yeaO - Uncharacterized protein YeaO, at 607,782 to 608,129
yeaO
MCAODC_18745: yoaF - DUF333 domain-containing protein, at 608,151 to 608,405
yoaF
MCAODC_18750: dgcP - diguanylate cyclase DgcP, at 608,588 to 609,613
dgcP
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 605.630 kb on - strand at 605.670 kb on - strand at 605.670 kb on - strand at 605.684 kb on + strand at 605.685 kb on - strand at 605.724 kb on - strand, within nimR at 605.726 kb on + strand, within nimR at 605.727 kb on - strand, within nimR at 605.727 kb on - strand, within nimR at 605.750 kb on - strand, within nimR at 605.750 kb on - strand, within nimR at 605.976 kb on - strand, within nimR at 606.102 kb on + strand, within nimR at 606.103 kb on - strand, within nimR at 606.143 kb on - strand, within nimR at 606.222 kb on - strand, within nimR at 606.222 kb on - strand, within nimR at 606.222 kb on - strand, within nimR at 606.291 kb on - strand, within nimR at 606.297 kb on - strand, within nimR at 606.468 kb on + strand at 606.469 kb on - strand at 606.497 kb on - strand at 606.517 kb on - strand at 606.546 kb on - strand at 606.546 kb on - strand at 606.617 kb on + strand at 606.618 kb on - strand at 606.704 kb on - strand, within nimT at 606.704 kb on - strand, within nimT at 606.704 kb on - strand, within nimT at 606.786 kb on - strand, within nimT at 606.849 kb on + strand, within nimT at 606.854 kb on - strand, within nimT at 606.895 kb on + strand, within nimT at 606.900 kb on - strand, within nimT at 606.907 kb on + strand, within nimT at 606.923 kb on + strand, within nimT at 606.966 kb on + strand, within nimT at 607.013 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.151 kb on - strand, within nimT at 607.154 kb on + strand, within nimT at 607.154 kb on + strand, within nimT at 607.225 kb on - strand, within nimT at 607.228 kb on - strand, within nimT at 607.236 kb on - strand, within nimT at 607.315 kb on + strand, within nimT at 607.354 kb on + strand, within nimT at 607.495 kb on + strand, within nimT at 607.495 kb on + strand, within nimT at 607.614 kb on - strand at 607.629 kb on - strand at 607.666 kb on + strand at 607.676 kb on - strand at 607.728 kb on + strand at 607.738 kb on + strand at 607.738 kb on + strand at 607.739 kb on - strand at 607.739 kb on - strand at 607.739 kb on - strand at 607.740 kb on + strand at 607.787 kb on + strand at 607.806 kb on + strand at 607.806 kb on + strand at 607.983 kb on + strand, within yeaO at 607.983 kb on + strand, within yeaO at 608.065 kb on - strand, within yeaO at 608.120 kb on + strand at 608.120 kb on + strand at 608.121 kb on - strand at 608.137 kb on - strand at 608.137 kb on - strand at 608.288 kb on - strand, within yoaF at 608.425 kb on - strand at 608.494 kb on + strand at 608.495 kb on - strand at 608.497 kb on + strand at 608.530 kb on - strand at 608.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 605,630 - +0.9 605,670 - +1.3 605,670 - -0.3 605,684 + +0.6 605,685 - -1.6 605,724 - nimR MCAODC_18730 0.12 +0.1 605,726 + nimR MCAODC_18730 0.12 +2.9 605,727 - nimR MCAODC_18730 0.12 +0.6 605,727 - nimR MCAODC_18730 0.12 +1.5 605,750 - nimR MCAODC_18730 0.15 +0.1 605,750 - nimR MCAODC_18730 0.15 -2.2 605,976 - nimR MCAODC_18730 0.42 -0.9 606,102 + nimR MCAODC_18730 0.58 -2.0 606,103 - nimR MCAODC_18730 0.58 +0.4 606,143 - nimR MCAODC_18730 0.63 +0.4 606,222 - nimR MCAODC_18730 0.73 +0.1 606,222 - nimR MCAODC_18730 0.73 -0.5 606,222 - nimR MCAODC_18730 0.73 -1.0 606,291 - nimR MCAODC_18730 0.81 -0.2 606,297 - nimR MCAODC_18730 0.82 -0.8 606,468 + -0.7 606,469 - +0.4 606,497 - +0.4 606,517 - +2.6 606,546 - -0.1 606,546 - -1.0 606,617 + -0.2 606,618 - +1.1 606,704 - nimT MCAODC_18735 0.13 +0.3 606,704 - nimT MCAODC_18735 0.13 -1.9 606,704 - nimT MCAODC_18735 0.13 -1.5 606,786 - nimT MCAODC_18735 0.20 -0.4 606,849 + nimT MCAODC_18735 0.26 +0.7 606,854 - nimT MCAODC_18735 0.26 -0.5 606,895 + nimT MCAODC_18735 0.30 -0.1 606,900 - nimT MCAODC_18735 0.30 +0.2 606,907 + nimT MCAODC_18735 0.31 +0.3 606,923 + nimT MCAODC_18735 0.32 +0.1 606,966 + nimT MCAODC_18735 0.36 -0.4 607,013 - nimT MCAODC_18735 0.40 +0.5 607,151 - nimT MCAODC_18735 0.51 -1.3 607,151 - nimT MCAODC_18735 0.51 +0.8 607,151 - nimT MCAODC_18735 0.51 -1.6 607,151 - nimT MCAODC_18735 0.51 +0.3 607,154 + nimT MCAODC_18735 0.51 +0.9 607,154 + nimT MCAODC_18735 0.51 +1.3 607,225 - nimT MCAODC_18735 0.57 +1.7 607,228 - nimT MCAODC_18735 0.58 -1.1 607,236 - nimT MCAODC_18735 0.58 -0.6 607,315 + nimT MCAODC_18735 0.65 +1.4 607,354 + nimT MCAODC_18735 0.68 +0.5 607,495 + nimT MCAODC_18735 0.80 -1.1 607,495 + nimT MCAODC_18735 0.80 +1.3 607,614 - +1.1 607,629 - -0.8 607,666 + -1.4 607,676 - +0.7 607,728 + -0.8 607,738 + -0.4 607,738 + +0.1 607,739 - -1.7 607,739 - +1.6 607,739 - +0.8 607,740 + -1.6 607,787 + +0.4 607,806 + +0.9 607,806 + -1.9 607,983 + yeaO MCAODC_18740 0.58 -0.4 607,983 + yeaO MCAODC_18740 0.58 -0.7 608,065 - yeaO MCAODC_18740 0.81 +1.3 608,120 + +1.3 608,120 + +0.1 608,121 - -0.3 608,137 - -1.4 608,137 - -1.3 608,288 - yoaF MCAODC_18745 0.54 +1.7 608,425 - +0.6 608,494 + +0.8 608,495 - +0.3 608,497 + +0.1 608,530 - -0.2 608,571 + -1.4
Or see this region's nucleotide sequence