Strain Fitness in Escherichia coli ECRC101 around MCAODC_17860

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgK and rsxA are separated by 76 nucleotidesrsxA and rsxB overlap by 1 nucleotidesrsxB and rsxC overlap by 8 nucleotides MCAODC_17850: ydgK - Inner membrane protein YdgK, at 434,150 to 434,590 ydgK MCAODC_17855: rsxA - electron transport complex subunit RsxA, at 434,667 to 435,248 rsxA MCAODC_17860: rsxB - electron transport complex subunit RsxB, at 435,248 to 435,826 rsxB MCAODC_17865: rsxC - electron transport complex subunit RsxC, at 435,819 to 438,137 rsxC Position (kb) 435 436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 434.250 kb on - strand, within ydgKat 434.417 kb on + strand, within ydgKat 434.417 kb on + strand, within ydgKat 434.417 kb on + strand, within ydgKat 434.417 kb on + strand, within ydgKat 434.418 kb on - strand, within ydgKat 434.419 kb on + strand, within ydgKat 434.419 kb on + strand, within ydgKat 434.419 kb on + strand, within ydgKat 434.419 kb on + strand, within ydgKat 434.420 kb on - strand, within ydgKat 434.434 kb on + strand, within ydgKat 434.490 kb on + strand, within ydgKat 434.588 kb on + strandat 434.597 kb on + strandat 434.598 kb on - strandat 434.603 kb on + strandat 434.701 kb on + strandat 434.964 kb on + strand, within rsxAat 434.993 kb on + strand, within rsxAat 435.187 kb on + strand, within rsxAat 435.203 kb on + strandat 435.204 kb on - strandat 435.256 kb on + strandat 435.446 kb on - strand, within rsxBat 435.592 kb on + strand, within rsxBat 435.592 kb on + strand, within rsxBat 435.610 kb on + strand, within rsxBat 435.616 kb on + strand, within rsxBat 435.616 kb on + strand, within rsxBat 435.702 kb on + strand, within rsxBat 436.079 kb on + strand, within rsxCat 436.145 kb on + strand, within rsxCat 436.307 kb on + strand, within rsxCat 436.326 kb on - strand, within rsxCat 436.326 kb on - strand, within rsxCat 436.350 kb on + strand, within rsxCat 436.351 kb on - strand, within rsxCat 436.351 kb on - strand, within rsxCat 436.424 kb on + strand, within rsxCat 436.463 kb on + strand, within rsxCat 436.570 kb on + strand, within rsxCat 436.570 kb on + strand, within rsxCat 436.575 kb on + strand, within rsxCat 436.575 kb on + strand, within rsxCat 436.630 kb on + strand, within rsxCat 436.630 kb on + strand, within rsxCat 436.633 kb on + strand, within rsxCat 436.656 kb on + strand, within rsxCat 436.656 kb on + strand, within rsxC

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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434,250 - ydgK MCAODC_17850 0.23 +1.1
434,417 + ydgK MCAODC_17850 0.61 -0.3
434,417 + ydgK MCAODC_17850 0.61 +0.6
434,417 + ydgK MCAODC_17850 0.61 -1.6
434,417 + ydgK MCAODC_17850 0.61 -1.1
434,418 - ydgK MCAODC_17850 0.61 -0.6
434,419 + ydgK MCAODC_17850 0.61 +1.3
434,419 + ydgK MCAODC_17850 0.61 +1.4
434,419 + ydgK MCAODC_17850 0.61 -0.2
434,419 + ydgK MCAODC_17850 0.61 -0.7
434,420 - ydgK MCAODC_17850 0.61 -0.3
434,434 + ydgK MCAODC_17850 0.64 +0.3
434,490 + ydgK MCAODC_17850 0.77 -0.4
434,588 + -1.0
434,597 + -3.0
434,598 - -1.6
434,603 + +1.0
434,701 + -4.2
434,964 + rsxA MCAODC_17855 0.51 -0.1
434,993 + rsxA MCAODC_17855 0.56 -2.9
435,187 + rsxA MCAODC_17855 0.89 -0.6
435,203 + +0.6
435,204 - +0.9
435,256 + -1.7
435,446 - rsxB MCAODC_17860 0.34 -2.6
435,592 + rsxB MCAODC_17860 0.59 -1.6
435,592 + rsxB MCAODC_17860 0.59 +1.6
435,610 + rsxB MCAODC_17860 0.63 -0.6
435,616 + rsxB MCAODC_17860 0.64 -0.6
435,616 + rsxB MCAODC_17860 0.64 -1.1
435,702 + rsxB MCAODC_17860 0.78 -0.7
436,079 + rsxC MCAODC_17865 0.11 -1.9
436,145 + rsxC MCAODC_17865 0.14 +0.1
436,307 + rsxC MCAODC_17865 0.21 -1.4
436,326 - rsxC MCAODC_17865 0.22 +1.5
436,326 - rsxC MCAODC_17865 0.22 +1.3
436,350 + rsxC MCAODC_17865 0.23 +1.1
436,351 - rsxC MCAODC_17865 0.23 -0.4
436,351 - rsxC MCAODC_17865 0.23 -1.6
436,424 + rsxC MCAODC_17865 0.26 -2.7
436,463 + rsxC MCAODC_17865 0.28 -0.7
436,570 + rsxC MCAODC_17865 0.32 -0.6
436,570 + rsxC MCAODC_17865 0.32 -3.1
436,575 + rsxC MCAODC_17865 0.33 -1.3
436,575 + rsxC MCAODC_17865 0.33 -1.1
436,630 + rsxC MCAODC_17865 0.35 -2.9
436,630 + rsxC MCAODC_17865 0.35 -1.0
436,633 + rsxC MCAODC_17865 0.35 +0.4
436,656 + rsxC MCAODC_17865 0.36 -0.8
436,656 + rsxC MCAODC_17865 0.36 +0.1

Or see this region's nucleotide sequence