Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17100 and MCAODC_17105 are separated by 261 nucleotides MCAODC_17105 and MCAODC_17110 are separated by 224 nucleotides MCAODC_17110 and rusA are separated by 62 nucleotides rusA and MCAODC_17120 are separated by 12 nucleotides
MCAODC_17100: MCAODC_17100 - AraC family transcriptional regulator, at 320,808 to 321,395
_17100
MCAODC_17105: MCAODC_17105 - TrmB family transcriptional regulator, at 321,657 to 321,854
_17105
MCAODC_17110: MCAODC_17110 - antiterminator, at 322,079 to 322,633
_17110
MCAODC_17115: rusA - Endodeoxyribonuclease RusA, at 322,696 to 323,001
rusA
MCAODC_17120: MCAODC_17120 - DUF968 domain-containing protein, at 323,014 to 324,063
_17120
Position (kb) 322
323 Strain fitness (log2 ratio) -1
0
1
2 at 321.088 kb on - strand, within MCAODC_17100 at 321.206 kb on + strand, within MCAODC_17100 at 321.323 kb on + strand, within MCAODC_17100 at 321.324 kb on - strand, within MCAODC_17100 at 321.366 kb on - strand at 321.592 kb on + strand at 321.639 kb on - strand at 321.639 kb on - strand at 321.692 kb on - strand, within MCAODC_17105 at 322.038 kb on - strand at 322.188 kb on - strand, within MCAODC_17110 at 322.238 kb on - strand, within MCAODC_17110 at 322.258 kb on - strand, within MCAODC_17110 at 322.258 kb on - strand, within MCAODC_17110 at 322.345 kb on + strand, within MCAODC_17110 at 322.453 kb on + strand, within MCAODC_17110 at 322.528 kb on - strand, within MCAODC_17110 at 322.629 kb on - strand at 322.629 kb on - strand at 322.634 kb on - strand at 322.634 kb on - strand at 322.634 kb on - strand at 323.608 kb on + strand, within MCAODC_17120 at 323.609 kb on - strand, within MCAODC_17120 at 323.609 kb on - strand, within MCAODC_17120 at 323.617 kb on + strand, within MCAODC_17120
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 321,088 - MCAODC_17100 0.48 -0.5 321,206 + MCAODC_17100 0.68 +0.2 321,323 + MCAODC_17100 0.88 +0.0 321,324 - MCAODC_17100 0.88 +0.5 321,366 - +2.0 321,592 + -1.1 321,639 - +0.1 321,639 - -0.6 321,692 - MCAODC_17105 0.18 +1.4 322,038 - -0.2 322,188 - MCAODC_17110 0.20 +0.5 322,238 - MCAODC_17110 0.29 -0.6 322,258 - MCAODC_17110 0.32 +0.7 322,258 - MCAODC_17110 0.32 +0.3 322,345 + MCAODC_17110 0.48 +1.0 322,453 + MCAODC_17110 0.67 +0.2 322,528 - MCAODC_17110 0.81 -0.5 322,629 - +0.6 322,629 - +1.2 322,634 - -0.8 322,634 - -0.9 322,634 - +2.6 323,608 + MCAODC_17120 0.57 +1.1 323,609 - MCAODC_17120 0.57 -0.8 323,609 - MCAODC_17120 0.57 +1.1 323,617 + MCAODC_17120 0.57 -1.6
Or see this region's nucleotide sequence