Strain Fitness in Escherichia coli ECRC101 around MCAODC_16415

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcurA and mcbR are separated by 197 nucleotidesmcbR and yncD are separated by 35 nucleotides MCAODC_16410: curA - NADPH-dependent curcumin/dihydrocurcumin reductase, at 172,354 to 173,391 curA MCAODC_16415: mcbR - colanic acid/biofilm transcriptional regulator McbR, at 173,589 to 174,254 mcbR MCAODC_16420: yncD - putative TonB-dependent receptor YncD, at 174,290 to 176,392 yncD Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 172.673 kb on + strand, within curAat 172.767 kb on + strand, within curAat 172.767 kb on + strand, within curAat 172.767 kb on + strand, within curAat 172.775 kb on + strand, within curAat 172.775 kb on + strand, within curAat 172.775 kb on + strand, within curAat 172.794 kb on + strand, within curAat 172.818 kb on - strand, within curAat 173.013 kb on + strand, within curAat 173.017 kb on + strand, within curAat 173.038 kb on - strand, within curAat 173.070 kb on + strand, within curAat 173.110 kb on + strand, within curAat 173.111 kb on - strand, within curAat 173.113 kb on - strand, within curAat 173.126 kb on + strand, within curAat 173.147 kb on + strand, within curAat 173.163 kb on + strand, within curAat 173.163 kb on + strand, within curAat 173.306 kb on + strandat 173.460 kb on - strandat 173.521 kb on + strandat 173.660 kb on + strand, within mcbRat 173.719 kb on + strand, within mcbRat 173.729 kb on + strand, within mcbRat 173.752 kb on + strand, within mcbRat 173.870 kb on - strand, within mcbRat 174.244 kb on - strandat 174.351 kb on + strandat 174.355 kb on - strandat 174.408 kb on - strandat 174.461 kb on - strandat 174.489 kb on + strandat 174.527 kb on - strand, within yncDat 174.530 kb on - strand, within yncDat 174.539 kb on - strand, within yncDat 174.583 kb on - strand, within yncDat 174.583 kb on - strand, within yncDat 174.587 kb on + strand, within yncDat 174.638 kb on - strand, within yncDat 174.851 kb on - strand, within yncDat 175.002 kb on + strand, within yncDat 175.003 kb on - strand, within yncDat 175.105 kb on - strand, within yncD

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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172,673 + curA MCAODC_16410 0.31 +0.0
172,767 + curA MCAODC_16410 0.40 +0.2
172,767 + curA MCAODC_16410 0.40 -0.9
172,767 + curA MCAODC_16410 0.40 -0.5
172,775 + curA MCAODC_16410 0.41 +0.6
172,775 + curA MCAODC_16410 0.41 +3.4
172,775 + curA MCAODC_16410 0.41 +0.6
172,794 + curA MCAODC_16410 0.42 +0.1
172,818 - curA MCAODC_16410 0.45 -0.6
173,013 + curA MCAODC_16410 0.63 +2.5
173,017 + curA MCAODC_16410 0.64 -1.4
173,038 - curA MCAODC_16410 0.66 +1.5
173,070 + curA MCAODC_16410 0.69 -0.2
173,110 + curA MCAODC_16410 0.73 +1.8
173,111 - curA MCAODC_16410 0.73 +0.9
173,113 - curA MCAODC_16410 0.73 +3.4
173,126 + curA MCAODC_16410 0.74 +0.8
173,147 + curA MCAODC_16410 0.76 +0.5
173,163 + curA MCAODC_16410 0.78 -0.5
173,163 + curA MCAODC_16410 0.78 -0.7
173,306 + -0.6
173,460 - -1.1
173,521 + -1.3
173,660 + mcbR MCAODC_16415 0.11 -1.5
173,719 + mcbR MCAODC_16415 0.20 -1.0
173,729 + mcbR MCAODC_16415 0.21 +1.5
173,752 + mcbR MCAODC_16415 0.24 +1.2
173,870 - mcbR MCAODC_16415 0.42 -3.2
174,244 - -0.0
174,351 + -1.2
174,355 - +1.2
174,408 - +0.0
174,461 - +0.8
174,489 + +2.2
174,527 - yncD MCAODC_16420 0.11 +0.2
174,530 - yncD MCAODC_16420 0.11 -0.9
174,539 - yncD MCAODC_16420 0.12 +2.1
174,583 - yncD MCAODC_16420 0.14 +0.3
174,583 - yncD MCAODC_16420 0.14 -0.2
174,587 + yncD MCAODC_16420 0.14 +0.8
174,638 - yncD MCAODC_16420 0.17 -0.5
174,851 - yncD MCAODC_16420 0.27 +1.6
175,002 + yncD MCAODC_16420 0.34 -0.9
175,003 - yncD MCAODC_16420 0.34 +1.2
175,105 - yncD MCAODC_16420 0.39 -0.0

Or see this region's nucleotide sequence