Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potB and ydcV overlap by 11 nucleotides ydcV and patD are separated by 21 nucleotides patD and ortT are separated by 386 nucleotides ortT and ydcY are separated by 85 nucleotides ydcY and MCAODC_16400 are separated by 0 nucleotides
MCAODC_16375: potB - spermidine/putrescine ABC transporter permease, at 167,158 to 168,099
potB
MCAODC_16380: ydcV - Inner membrane ABC transporter permease protein YdcV, at 168,089 to 168,883
ydcV
MCAODC_16385: patD - aminobutyraldehyde dehydrogenase, at 168,905 to 170,329
patD
MCAODC_16390: ortT - orphan toxin OrtT, at 170,716 to 170,889
ortT
MCAODC_16395: ydcY - Uncharacterized protein YdcY, at 170,975 to 171,208
ydcY
MCAODC_16400: MCAODC_16400 - Putative inner membrane exporter, YdcZ, at 171,209 to 171,658
_16400
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 167.957 kb on - strand, within potB at 168.055 kb on + strand at 168.056 kb on - strand at 168.187 kb on + strand, within ydcV at 168.318 kb on + strand, within ydcV at 168.522 kb on + strand, within ydcV at 168.522 kb on + strand, within ydcV at 168.523 kb on - strand, within ydcV at 168.630 kb on + strand, within ydcV at 168.630 kb on + strand, within ydcV at 168.630 kb on + strand, within ydcV at 168.631 kb on - strand, within ydcV at 168.793 kb on + strand, within ydcV at 168.793 kb on + strand, within ydcV at 168.814 kb on + strand at 168.822 kb on + strand at 168.823 kb on - strand at 168.913 kb on + strand at 168.968 kb on + strand at 169.123 kb on + strand, within patD at 169.186 kb on + strand, within patD at 169.186 kb on + strand, within patD at 169.294 kb on + strand, within patD at 169.294 kb on + strand, within patD at 169.475 kb on - strand, within patD at 169.630 kb on + strand, within patD at 169.711 kb on + strand, within patD at 169.721 kb on + strand, within patD at 169.724 kb on + strand, within patD at 169.724 kb on + strand, within patD at 169.725 kb on - strand, within patD at 169.725 kb on - strand, within patD at 169.725 kb on - strand, within patD at 169.744 kb on + strand, within patD at 169.763 kb on + strand, within patD at 169.781 kb on + strand, within patD at 169.781 kb on + strand, within patD at 169.782 kb on - strand, within patD at 169.976 kb on + strand, within patD at 169.976 kb on + strand, within patD at 169.979 kb on + strand, within patD at 170.052 kb on + strand, within patD at 170.183 kb on + strand, within patD at 170.192 kb on - strand at 170.192 kb on - strand at 170.220 kb on + strand at 170.270 kb on - strand at 170.328 kb on - strand at 170.349 kb on - strand at 170.456 kb on - strand at 170.456 kb on - strand at 170.456 kb on - strand at 170.456 kb on - strand at 170.456 kb on - strand at 170.490 kb on - strand at 170.495 kb on + strand at 170.496 kb on - strand at 170.498 kb on + strand at 170.498 kb on + strand at 170.499 kb on - strand at 170.499 kb on - strand at 170.548 kb on - strand at 170.554 kb on - strand at 170.554 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.559 kb on - strand at 170.583 kb on + strand at 170.927 kb on + strand at 171.051 kb on + strand, within ydcY at 171.098 kb on + strand, within ydcY at 171.151 kb on + strand, within ydcY at 171.151 kb on + strand, within ydcY at 171.151 kb on + strand, within ydcY at 171.151 kb on + strand, within ydcY at 171.152 kb on - strand, within ydcY
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 167,957 - potB MCAODC_16375 0.85 -0.3 168,055 + +2.8 168,056 - +2.1 168,187 + ydcV MCAODC_16380 0.12 -1.6 168,318 + ydcV MCAODC_16380 0.29 +0.2 168,522 + ydcV MCAODC_16380 0.54 +0.0 168,522 + ydcV MCAODC_16380 0.54 +0.1 168,523 - ydcV MCAODC_16380 0.55 -1.0 168,630 + ydcV MCAODC_16380 0.68 +0.5 168,630 + ydcV MCAODC_16380 0.68 -0.8 168,630 + ydcV MCAODC_16380 0.68 -2.9 168,631 - ydcV MCAODC_16380 0.68 +0.4 168,793 + ydcV MCAODC_16380 0.89 -0.6 168,793 + ydcV MCAODC_16380 0.89 +0.8 168,814 + +0.5 168,822 + +0.8 168,823 - -0.2 168,913 + -0.8 168,968 + -0.9 169,123 + patD MCAODC_16385 0.15 -0.8 169,186 + patD MCAODC_16385 0.20 -0.1 169,186 + patD MCAODC_16385 0.20 +0.1 169,294 + patD MCAODC_16385 0.27 +0.8 169,294 + patD MCAODC_16385 0.27 -0.5 169,475 - patD MCAODC_16385 0.40 -1.5 169,630 + patD MCAODC_16385 0.51 -0.9 169,711 + patD MCAODC_16385 0.57 +1.5 169,721 + patD MCAODC_16385 0.57 -1.2 169,724 + patD MCAODC_16385 0.57 -0.4 169,724 + patD MCAODC_16385 0.57 +1.2 169,725 - patD MCAODC_16385 0.58 +0.5 169,725 - patD MCAODC_16385 0.58 -0.2 169,725 - patD MCAODC_16385 0.58 -0.7 169,744 + patD MCAODC_16385 0.59 -1.0 169,763 + patD MCAODC_16385 0.60 -0.9 169,781 + patD MCAODC_16385 0.61 +0.9 169,781 + patD MCAODC_16385 0.61 -0.7 169,782 - patD MCAODC_16385 0.62 +0.5 169,976 + patD MCAODC_16385 0.75 -0.9 169,976 + patD MCAODC_16385 0.75 -1.0 169,979 + patD MCAODC_16385 0.75 -0.5 170,052 + patD MCAODC_16385 0.80 -1.1 170,183 + patD MCAODC_16385 0.90 +0.6 170,192 - -0.5 170,192 - +0.3 170,220 + -2.4 170,270 - +0.4 170,328 - -0.6 170,349 - +0.6 170,456 - -1.3 170,456 - -0.0 170,456 - -0.5 170,456 - -1.5 170,456 - -0.7 170,490 - -1.1 170,495 + -1.3 170,496 - -0.5 170,498 + +0.0 170,498 + -3.9 170,499 - -3.2 170,499 - -2.6 170,548 - +0.9 170,554 - -1.7 170,554 - -0.8 170,556 - -0.1 170,556 - -0.1 170,556 - -1.0 170,559 - +0.8 170,583 + -0.4 170,927 + -0.4 171,051 + ydcY MCAODC_16395 0.32 +1.8 171,098 + ydcY MCAODC_16395 0.53 +0.5 171,151 + ydcY MCAODC_16395 0.75 -1.7 171,151 + ydcY MCAODC_16395 0.75 +0.5 171,151 + ydcY MCAODC_16395 0.75 +1.2 171,151 + ydcY MCAODC_16395 0.75 +1.5 171,152 - ydcY MCAODC_16395 0.76 +0.3
Or see this region's nucleotide sequence