Strain Fitness in Escherichia coli ECRC101 around MCAODC_15420

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_15410 and tnp-IS3 overlap by 35 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and repE are separated by 75 nucleotides MCAODC_15410: MCAODC_15410 - AMP nucleosidase, at 68,120 to 68,200 _15410 MCAODC_15415: tnp-IS3 - IS3 family transposase, at 68,166 to 69,053 tnp-IS3 MCAODC_15420: tnp-IS3 - IS3 family transposase, at 69,053 to 69,379 tnp-IS3 MCAODC_15425: repE - replication initiation protein RepE, at 69,455 to 70,210 repE Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.079 kb on + strandat 68.079 kb on + strandat 68.079 kb on + strandat 68.097 kb on + strandat 69.406 kb on + strandat 69.406 kb on + strandat 69.406 kb on + strandat 69.406 kb on + strandat 69.472 kb on + strandat 69.539 kb on + strand, within repEat 69.540 kb on - strand, within repEat 69.540 kb on - strand, within repEat 69.540 kb on - strand, within repEat 69.540 kb on - strand, within repEat 69.541 kb on + strand, within repEat 69.541 kb on + strand, within repEat 69.541 kb on + strand, within repEat 69.541 kb on + strand, within repEat 69.541 kb on + strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.542 kb on - strand, within repEat 69.566 kb on - strand, within repEat 69.566 kb on - strand, within repEat 69.572 kb on + strand, within repEat 69.572 kb on + strand, within repEat 69.572 kb on + strand, within repEat 69.573 kb on - strand, within repEat 69.573 kb on - strand, within repEat 69.573 kb on - strand, within repEat 69.573 kb on - strand, within repEat 69.573 kb on - strand, within repEat 69.573 kb on - strand, within repEat 69.612 kb on + strand, within repEat 69.613 kb on - strand, within repEat 69.649 kb on + strand, within repEat 69.650 kb on - strand, within repEat 69.650 kb on - strand, within repEat 69.653 kb on + strand, within repEat 69.653 kb on + strand, within repEat 69.654 kb on - strand, within repEat 69.654 kb on - strand, within repEat 69.688 kb on + strand, within repEat 69.689 kb on - strand, within repEat 69.689 kb on - strand, within repEat 69.698 kb on - strand, within repEat 69.699 kb on + strand, within repEat 69.699 kb on + strand, within repEat 69.700 kb on - strand, within repEat 69.700 kb on - strand, within repEat 69.700 kb on - strand, within repEat 69.700 kb on - strand, within repEat 69.833 kb on + strand, within repEat 69.840 kb on + strand, within repEat 69.840 kb on + strand, within repEat 69.841 kb on - strand, within repEat 69.841 kb on - strand, within repEat 69.841 kb on - strand, within repEat 69.841 kb on - strand, within repEat 69.841 kb on - strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.844 kb on + strand, within repEat 69.845 kb on - strand, within repEat 69.845 kb on - strand, within repEat 69.845 kb on - strand, within repEat 69.845 kb on - strand, within repEat 69.845 kb on - strand, within repEat 69.935 kb on + strand, within repEat 69.935 kb on + strand, within repEat 69.935 kb on + strand, within repEat 69.950 kb on + strand, within repEat 69.951 kb on - strand, within repEat 69.973 kb on + strand, within repEat 69.973 kb on + strand, within repEat 70.020 kb on + strand, within repEat 70.020 kb on + strand, within repEat 70.054 kb on + strand, within repEat 70.054 kb on + strand, within repEat 70.054 kb on + strand, within repEat 70.055 kb on - strand, within repEat 70.055 kb on - strand, within repEat 70.055 kb on - strand, within repEat 70.130 kb on + strand, within repEat 70.130 kb on + strand, within repEat 70.131 kb on - strand, within repEat 70.131 kb on - strand, within repEat 70.131 kb on - strand, within repEat 70.131 kb on - strand, within repEat 70.166 kb on - strandat 70.166 kb on - strandat 70.221 kb on - strandat 70.265 kb on + strandat 70.265 kb on + strandat 70.266 kb on - strandat 70.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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68,079 + -0.2
68,079 + -1.2
68,079 + +0.2
68,097 + +1.4
69,406 + +0.8
69,406 + -0.3
69,406 + +0.2
69,406 + +2.0
69,472 + +1.6
69,539 + repE MCAODC_15425 0.11 -0.6
69,540 - repE MCAODC_15425 0.11 -0.3
69,540 - repE MCAODC_15425 0.11 +1.1
69,540 - repE MCAODC_15425 0.11 +1.5
69,540 - repE MCAODC_15425 0.11 -0.7
69,541 + repE MCAODC_15425 0.11 -0.2
69,541 + repE MCAODC_15425 0.11 +1.6
69,541 + repE MCAODC_15425 0.11 +0.4
69,541 + repE MCAODC_15425 0.11 +1.0
69,541 + repE MCAODC_15425 0.11 -1.0
69,542 - repE MCAODC_15425 0.12 +1.0
69,542 - repE MCAODC_15425 0.12 +0.3
69,542 - repE MCAODC_15425 0.12 -0.3
69,542 - repE MCAODC_15425 0.12 -1.0
69,542 - repE MCAODC_15425 0.12 +0.0
69,542 - repE MCAODC_15425 0.12 +0.4
69,542 - repE MCAODC_15425 0.12 -0.8
69,566 - repE MCAODC_15425 0.15 +0.2
69,566 - repE MCAODC_15425 0.15 -1.2
69,572 + repE MCAODC_15425 0.15 -0.4
69,572 + repE MCAODC_15425 0.15 +0.8
69,572 + repE MCAODC_15425 0.15 -0.3
69,573 - repE MCAODC_15425 0.16 +0.5
69,573 - repE MCAODC_15425 0.16 +0.8
69,573 - repE MCAODC_15425 0.16 +1.6
69,573 - repE MCAODC_15425 0.16 +1.2
69,573 - repE MCAODC_15425 0.16 -0.6
69,573 - repE MCAODC_15425 0.16 +1.9
69,612 + repE MCAODC_15425 0.21 +0.5
69,613 - repE MCAODC_15425 0.21 -0.0
69,649 + repE MCAODC_15425 0.26 +0.5
69,650 - repE MCAODC_15425 0.26 -0.9
69,650 - repE MCAODC_15425 0.26 -1.5
69,653 + repE MCAODC_15425 0.26 +0.2
69,653 + repE MCAODC_15425 0.26 -0.5
69,654 - repE MCAODC_15425 0.26 +0.1
69,654 - repE MCAODC_15425 0.26 +2.0
69,688 + repE MCAODC_15425 0.31 -0.1
69,689 - repE MCAODC_15425 0.31 +0.8
69,689 - repE MCAODC_15425 0.31 -0.1
69,698 - repE MCAODC_15425 0.32 -0.8
69,699 + repE MCAODC_15425 0.32 -1.4
69,699 + repE MCAODC_15425 0.32 +0.0
69,700 - repE MCAODC_15425 0.32 -1.0
69,700 - repE MCAODC_15425 0.32 -0.1
69,700 - repE MCAODC_15425 0.32 -0.5
69,700 - repE MCAODC_15425 0.32 -0.2
69,833 + repE MCAODC_15425 0.50 -1.9
69,840 + repE MCAODC_15425 0.51 +1.2
69,840 + repE MCAODC_15425 0.51 +1.2
69,841 - repE MCAODC_15425 0.51 +0.4
69,841 - repE MCAODC_15425 0.51 +0.6
69,841 - repE MCAODC_15425 0.51 -0.1
69,841 - repE MCAODC_15425 0.51 +0.0
69,841 - repE MCAODC_15425 0.51 -0.8
69,844 + repE MCAODC_15425 0.51 +1.4
69,844 + repE MCAODC_15425 0.51 -0.4
69,844 + repE MCAODC_15425 0.51 -1.1
69,844 + repE MCAODC_15425 0.51 -0.1
69,844 + repE MCAODC_15425 0.51 -0.9
69,844 + repE MCAODC_15425 0.51 +1.6
69,844 + repE MCAODC_15425 0.51 -2.3
69,844 + repE MCAODC_15425 0.51 +0.1
69,845 - repE MCAODC_15425 0.52 +2.2
69,845 - repE MCAODC_15425 0.52 +0.9
69,845 - repE MCAODC_15425 0.52 +1.2
69,845 - repE MCAODC_15425 0.52 +1.8
69,845 - repE MCAODC_15425 0.52 -0.4
69,935 + repE MCAODC_15425 0.63 -0.8
69,935 + repE MCAODC_15425 0.63 -0.6
69,935 + repE MCAODC_15425 0.63 +0.4
69,950 + repE MCAODC_15425 0.65 +0.2
69,951 - repE MCAODC_15425 0.66 -3.0
69,973 + repE MCAODC_15425 0.69 -0.7
69,973 + repE MCAODC_15425 0.69 -0.1
70,020 + repE MCAODC_15425 0.75 -1.5
70,020 + repE MCAODC_15425 0.75 +0.6
70,054 + repE MCAODC_15425 0.79 +0.7
70,054 + repE MCAODC_15425 0.79 +1.0
70,054 + repE MCAODC_15425 0.79 +0.3
70,055 - repE MCAODC_15425 0.79 -0.8
70,055 - repE MCAODC_15425 0.79 +1.3
70,055 - repE MCAODC_15425 0.79 +0.5
70,130 + repE MCAODC_15425 0.89 -0.1
70,130 + repE MCAODC_15425 0.89 -0.2
70,131 - repE MCAODC_15425 0.89 -0.2
70,131 - repE MCAODC_15425 0.89 +0.2
70,131 - repE MCAODC_15425 0.89 -1.3
70,131 - repE MCAODC_15425 0.89 +0.2
70,166 - -0.3
70,166 - +0.4
70,221 - +0.5
70,265 + -0.1
70,265 + -0.5
70,266 - +0.3
70,275 - -0.8

Or see this region's nucleotide sequence