Strain Fitness in Escherichia coli ECRC101 around MCAODC_15060

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjdB and MCAODC_15050 are separated by 13 nucleotidesMCAODC_15050 and MCAODC_15055 are separated by 26 nucleotidesMCAODC_15055 and MCAODC_15060 are separated by 43 nucleotidesMCAODC_15060 and MCAODC_15065 overlap by 4 nucleotidesMCAODC_15065 and MCAODC_15070 overlap by 1 nucleotides MCAODC_15045: yjdB - phage tail protein, at 2,938,800 to 2,939,552 yjdB MCAODC_15050: MCAODC_15050 - phage minor tail protein G, at 2,939,566 to 2,939,988 _15050 MCAODC_15055: MCAODC_15055 - phage tail assembly protein T, at 2,940,015 to 2,940,323 _15055 MCAODC_15060: MCAODC_15060 - phage tail tape measure protein, at 2,940,367 to 2,943,012 _15060 MCAODC_15065: MCAODC_15065 - phage tail protein, at 2,943,009 to 2,943,338 _15065 MCAODC_15070: MCAODC_15070 - phage minor tail protein L, at 2,943,338 to 2,944,036 _15070 Position (kb) 2940 2941 2942 2943 2944Strain fitness (log2 ratio) -2 -1 0 1at 2941.955 kb on + strand, within MCAODC_15060at 2941.975 kb on + strand, within MCAODC_15060at 2942.680 kb on - strand, within MCAODC_15060at 2942.683 kb on + strand, within MCAODC_15060at 2942.684 kb on - strand, within MCAODC_15060at 2942.782 kb on + strandat 2942.782 kb on + strandat 2942.798 kb on - strandat 2942.988 kb on + strandat 2942.988 kb on + strandat 2943.850 kb on + strand, within MCAODC_15070at 2943.850 kb on + strand, within MCAODC_15070

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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2,941,955 + MCAODC_15060 0.60 -0.1
2,941,975 + MCAODC_15060 0.61 -2.4
2,942,680 - MCAODC_15060 0.87 -2.7
2,942,683 + MCAODC_15060 0.88 -0.6
2,942,684 - MCAODC_15060 0.88 -1.8
2,942,782 + +1.5
2,942,782 + +0.1
2,942,798 - -0.4
2,942,988 + -0.4
2,942,988 + +0.0
2,943,850 + MCAODC_15070 0.73 -1.3
2,943,850 + MCAODC_15070 0.73 +0.5

Or see this region's nucleotide sequence