Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjdB and MCAODC_15050 are separated by 13 nucleotides MCAODC_15050 and MCAODC_15055 are separated by 26 nucleotides MCAODC_15055 and MCAODC_15060 are separated by 43 nucleotides MCAODC_15060 and MCAODC_15065 overlap by 4 nucleotides MCAODC_15065 and MCAODC_15070 overlap by 1 nucleotides
MCAODC_15045: yjdB - phage tail protein, at 2,938,800 to 2,939,552
yjdB
MCAODC_15050: MCAODC_15050 - phage minor tail protein G, at 2,939,566 to 2,939,988
_15050
MCAODC_15055: MCAODC_15055 - phage tail assembly protein T, at 2,940,015 to 2,940,323
_15055
MCAODC_15060: MCAODC_15060 - phage tail tape measure protein, at 2,940,367 to 2,943,012
_15060
MCAODC_15065: MCAODC_15065 - phage tail protein, at 2,943,009 to 2,943,338
_15065
MCAODC_15070: MCAODC_15070 - phage minor tail protein L, at 2,943,338 to 2,944,036
_15070
Position (kb)
2940
2941
2942
2943
2944 Strain fitness (log2 ratio)
-2
-1
0
1 at 2941.955 kb on + strand, within MCAODC_15060 at 2941.975 kb on + strand, within MCAODC_15060 at 2942.680 kb on - strand, within MCAODC_15060 at 2942.683 kb on + strand, within MCAODC_15060 at 2942.684 kb on - strand, within MCAODC_15060 at 2942.782 kb on + strand at 2942.782 kb on + strand at 2942.798 kb on - strand at 2942.988 kb on + strand at 2942.988 kb on + strand at 2943.850 kb on + strand, within MCAODC_15070 at 2943.850 kb on + strand, within MCAODC_15070
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 2,941,955 + MCAODC_15060 0.60 -0.1 2,941,975 + MCAODC_15060 0.61 -2.4 2,942,680 - MCAODC_15060 0.87 -2.7 2,942,683 + MCAODC_15060 0.88 -0.6 2,942,684 - MCAODC_15060 0.88 -1.8 2,942,782 + +1.5 2,942,782 + +0.1 2,942,798 - -0.4 2,942,988 + -0.4 2,942,988 + +0.0 2,943,850 + MCAODC_15070 0.73 -1.3 2,943,850 + MCAODC_15070 0.73 +0.5
Or see this region's nucleotide sequence